{"payload":{"pageCount":6,"repositories":[{"type":"Public","name":"PyBenchFramework","owner":"flatironinstitute","isFork":false,"description":"BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,3,8],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-02T00:09:39.877Z"}},{"type":"Public","name":"nifty-ls","owner":"flatironinstitute","isFork":false,"description":"A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!","allTopics":["time-series","lomb-scargle-periodogram","spectral-analysis"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":11,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-01T22:37:23.097Z"}},{"type":"Public","name":"jax-finufft","owner":"flatironinstitute","isFork":false,"description":"JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":71,"forksCount":2,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,0,0,15,2,2,3,1,8,1,1,0,4,2,1,0,1,3,2,1,1,0,4,1,2,3,0,4,4,2,1,1,0,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-01T21:04:50.292Z"}},{"type":"Public","name":"stan-playground","owner":"flatironinstitute","isFork":false,"description":"Run Stan models in the browser","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":4,"issueCount":9,"starsCount":2,"forksCount":0,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-01T19:44:28.551Z"}},{"type":"Public","name":"comptools24","owner":"flatironinstitute","isFork":false,"description":"Computational Tools for PDEs with Complicated Geometries and Interfaces workshop materials, June 10-14, 2024.","allTopics":[],"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":0,"issueCount":0,"starsCount":4,"forksCount":2,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7,1,8],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-01T18:51:52.970Z"}},{"type":"Public","name":"sciware-command-intro","owner":"flatironinstitute","isFork":false,"description":"demo repository for use with Sciware intro to the command line","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":1,"issueCount":1,"starsCount":0,"forksCount":1,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,2,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-01T17:38:31.986Z"}},{"type":"Public","name":"nemos","owner":"flatironinstitute","isFork":false,"description":"NEural MOdelS, a statistical modeling framework for neuroscience.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":3,"issueCount":63,"starsCount":32,"forksCount":5,"license":"MIT License","participation":[37,37,39,29,0,0,24,49,38,28,2,31,22,15,19,32,1,0,6,0,7,58,32,0,16,43,1,54,50,0,21,16,6,3,9,50,48,29,52,2,44,90,69,47,43,43,24,3,4,5,0,15],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T21:15:05.264Z"}},{"type":"Public","name":"ccq-software-build","owner":"flatironinstitute","isFork":false,"description":"CCQ software build scripts","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":10,"forksCount":4,"license":null,"participation":[2,0,1,0,0,2,2,0,0,0,0,0,0,0,1,3,1,0,0,1,0,0,0,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,0,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T20:38:07.608Z"}},{"type":"Public","name":"nemos-workshop-feb-2024","owner":"flatironinstitute","isFork":false,"description":"Materials for nemos workshop, Feb 2024","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":5,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T20:24:56.721Z"}},{"type":"Public","name":"finufft","owner":"flatironinstitute","isFork":false,"description":"Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":11,"issueCount":43,"starsCount":254,"forksCount":72,"license":"Other","participation":[1,104,42,8,4,17,3,7,5,1,0,6,23,10,5,14,9,2,1,6,4,0,0,0,11,32,21,49,27,22,1,0,2,1,3,4,4,2,0,0,0,0,0,5,0,2,5,0,6,21,1,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T19:41:46.462Z"}},{"type":"Public","name":"slurm","owner":"flatironinstitute","isFork":true,"description":"Slurm: A Highly Scalable Workload Manager","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":627,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T19:37:08.537Z"}},{"type":"Public","name":"CaImAn","owner":"flatironinstitute","isFork":false,"description":"Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.","allTopics":["2-photon","calcium-imaging","motion-correction","source-extraction","deconvolution","cnmf"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":5,"issueCount":56,"starsCount":610,"forksCount":356,"license":"GNU General Public License v2.0","participation":[16,9,0,6,3,3,2,5,4,11,4,18,2,0,1,14,24,19,12,22,20,13,3,32,5,6,5,5,0,0,0,0,4,11,26,4,34,19,14,6,10,20,14,28,13,14,21,18,1,5,0,8],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T19:26:47.377Z"}},{"type":"Public","name":"ccn-software-fens-2024","owner":"flatironinstitute","isFork":false,"description":"Materials for CCN software workshop at FENS 2024","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T13:58:08.391Z"}},{"type":"Public","name":"cppdlr","owner":"flatironinstitute","isFork":false,"description":"Discrete Lehmann representation of imaginary time Green's functions","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":1,"starsCount":8,"forksCount":3,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T21:34:05.161Z"}},{"type":"Public","name":"sciware","owner":"flatironinstitute","isFork":false,"description":"Learning materials for scientific software development","allTopics":["learning","science","education","software-development"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":2,"starsCount":70,"forksCount":34,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T20:00:34.979Z"}},{"type":"Public","name":"polymathic_viz","owner":"flatironinstitute","isFork":false,"description":"Tools for creating visualizations that are useful for the polymathic project.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 2-Clause \"Simplified\" License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3,0,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T15:50:46.832Z"}},{"type":"Public","name":"nixpack","owner":"flatironinstitute","isFork":false,"description":"nix+spack = nixpack (spanix?)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":1,"starsCount":37,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T18:06:59.179Z"}},{"type":"Public","name":"aLENS_analysis","owner":"flatironinstitute","isFork":false,"description":"Postprocessing & analysis scripts for aLENS data","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Other","participation":[0,0,2,0,0,0,1,0,1,1,0,0,1,0,0,0,3,4,1,3,2,3,0,1,1,2,0,0,0,0,0,4,0,0,1,0,1,6,2,7,6,8,7,2,2,2,3,3,2,1,1,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T17:38:53.428Z"}},{"type":"Public","name":"martini-microtubule","owner":"flatironinstitute","isFork":false,"description":"Scripts for Iteratively Refined Distance Based Elastic Network adapted for microtubules.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,9],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T14:35:06.916Z"}},{"type":"Public","name":"neuroRSE","owner":"flatironinstitute","isFork":false,"description":"Website for CCN's neuroRSE group","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T14:08:45.958Z"}},{"type":"Public","name":"neurosift","owner":"flatironinstitute","isFork":false,"description":"Browser-based NWB visualization and DANDI exploration","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":1,"issueCount":40,"starsCount":35,"forksCount":4,"license":"Apache License 2.0","participation":[0,16,11,13,31,45,35,7,26,7,3,0,0,0,1,0,1,0,2,0,0,0,3,0,1,0,6,4,3,0,2,1,1,0,5,2,2,10,24,5,5,0,0,3,2,11,0,2,4,0,0,2],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-27T19:16:28.846Z"}},{"type":"Public","name":"deepblast","owner":"flatironinstitute","isFork":false,"description":"Neural Networks for Protein Sequence Alignment","allTopics":["protein-structure","language-modeling","protein","neural-networks","protein-sequences","sequence-alignment","structural-alignments"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":24,"starsCount":104,"forksCount":17,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":[1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,2,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-27T13:11:41.221Z"}},{"type":"Public","name":"dendro-docs","owner":"flatironinstitute","isFork":false,"description":"Documentation for Dendro","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":0,"issueCount":3,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-26T16:39:48.422Z"}},{"type":"Public","name":"flatiron-coffee","owner":"flatironinstitute","isFork":false,"description":"Meet your colleagues across the Institute","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":4,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T05:30:35.530Z"}},{"type":"Public","name":"inferelator-velocity","owner":"flatironinstitute","isFork":false,"description":"Calculate dynamic (time-dependent) latent parameters from single-cell expression data","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":"MIT License","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,3,6,0,0,0,0,0,0,0,0,0,0,1,2,6,2,0,0,0,0,1,7,0,3,7,5,0,1,0,0,0,7,4,0,3,3,3,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-20T17:35:03.503Z"}},{"type":"Public","name":"dendro","owner":"flatironinstitute","isFork":false,"description":"Analyze neuroscience data in the cloud","allTopics":["open-source","neuroscience","open-science","cloud-computing","spike-sorting","neurophysiology"],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":2,"issueCount":18,"starsCount":16,"forksCount":2,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,46,56,72,10,61,48,74,12,22,8,1,20,36,39,1,11,19,14,14,0,0,2,4,1,9,9,0,2,0,0,4,1,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-20T12:26:05.242Z"}},{"type":"Public","name":"flathub","owner":"flatironinstitute","isFork":false,"description":"A simple elasticsearch frontend for serving astrophysical simulation catalog data","allTopics":[],"primaryLanguage":{"name":"Haskell","color":"#5e5086"},"pullRequestCount":0,"issueCount":14,"starsCount":9,"forksCount":5,"license":"Apache License 2.0","participation":[0,7,4,4,0,5,13,17,9,20,15,9,4,0,5,7,9,3,15,29,25,7,10,25,3,0,14,15,8,0,0,9,5,10,7,18,22,31,0,7,2,1,0,0,2,0,2,19,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-17T19:28:51.696Z"}},{"type":"Public","name":"PointCloud_Regression","owner":"flatironinstitute","isFork":false,"description":"Point Cloud regression with new algebraic representation on ModelNet dataset (ICCV 2023)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":7,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-15T18:57:45.703Z"}},{"type":"Public","name":"kachery-cloud","owner":"flatironinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":9,"starsCount":20,"forksCount":4,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,3,0,0,0,0,0,0,4,0,0,0,0,0,0,0,3,0,0,0,0,0,0,0,0,0,1,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T18:37:11.067Z"}},{"type":"Public","name":"SkellySim","owner":"flatironinstitute","isFork":false,"description":"Hydrodynamic Cytoskeleton Simulator","allTopics":["cpp","openmp","mpi","high-performance-computing","fluid-dynamics","trilinos","fast-multipole-method","cytoskeleton","molecular-motors","hybrid-parallelism","python","simulation"],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":1,"issueCount":14,"starsCount":21,"forksCount":2,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-13T16:05:23.826Z"}}],"repositoryCount":169,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}