{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":146336845,"defaultBranch":"master","name":"SigProfilerMatrixGenerator","ownerLogin":"AlexandrovLab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2018-08-27T18:20:33.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/42589306?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1714160506.0","currentOid":""},"activityList":{"items":[{"before":"9b380c51d2db2fbbd8181ff48bc4ca4903994003","after":null,"ref":"refs/heads/feature","pushedAt":"2024-04-26T19:38:19.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":"c5d52ff65bde7f607c3ddb74656cd1b2c3e2f889","after":"6bda931f251f386613f50b7093103f7d7f3ebf54","ref":"refs/heads/master","pushedAt":"2024-04-26T19:38:15.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Merge pull request #180 from AlexandrovLab/feature\n\nUpgrade to v1.2.26","shortMessageHtmlLink":"Merge pull request #180 from AlexandrovLab/feature"}},{"before":"3d309f6019279fb49f3ebd25759c0ea1a3ae617f","after":null,"ref":"refs/heads/sv_plot_fix","pushedAt":"2024-04-25T20:34:10.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":"ba7b89eba7fc9a2dbf0ce755b4b2d215d14eb1ff","after":null,"ref":"refs/heads/binom_test","pushedAt":"2024-04-25T20:34:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":null,"after":"9b380c51d2db2fbbd8181ff48bc4ca4903994003","ref":"refs/heads/feature","pushedAt":"2024-04-25T18:15:14.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Upgrade to v1.2.26","shortMessageHtmlLink":"Upgrade to v1.2.26"}},{"before":null,"after":"ba7b89eba7fc9a2dbf0ce755b4b2d215d14eb1ff","ref":"refs/heads/binom_test","pushedAt":"2024-04-19T20:21:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Scipy v1.12.0 dependency update for binom_test to binomtest","shortMessageHtmlLink":"Scipy v1.12.0 dependency update for binom_test to binomtest"}},{"before":"f2f917f16ed266d8b8a5ddee806d70114403537f","after":null,"ref":"refs/heads/binom_test","pushedAt":"2024-04-19T20:21:30.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":null,"after":"f2f917f16ed266d8b8a5ddee806d70114403537f","ref":"refs/heads/binom_test","pushedAt":"2024-04-19T20:00:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Scipy v1.12.0 dependency update for binom_test to binomtest","shortMessageHtmlLink":"Scipy v1.12.0 dependency update for binom_test to binomtest"}},{"before":null,"after":"3d309f6019279fb49f3ebd25759c0ea1a3ae617f","ref":"refs/heads/sv_plot_fix","pushedAt":"2024-04-18T16:56:57.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Call plotSV with SigProfilerPlotting","shortMessageHtmlLink":"Call plotSV with SigProfilerPlotting"}},{"before":"610876c1343650077e0ec543422f772666ce65b5","after":null,"ref":"refs/heads/rn7","pushedAt":"2024-02-14T23:12:52.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":"518e22bbbd92a4035c0981a88ed0f7847e6c37cc","after":"c5d52ff65bde7f607c3ddb74656cd1b2c3e2f889","ref":"refs/heads/master","pushedAt":"2024-02-14T23:12:50.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Merge pull request #175 from AlexandrovLab/rn7\n\nv1.2.25: Add rn7 and resolve custom install tsb_BED path issue","shortMessageHtmlLink":"Merge pull request #175 from AlexandrovLab/rn7"}},{"before":null,"after":"610876c1343650077e0ec543422f772666ce65b5","ref":"refs/heads/rn7","pushedAt":"2024-02-14T23:05:24.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"v1.2.25: Add rn7 and resolve custom install tsb_BED path issue","shortMessageHtmlLink":"v1.2.25: Add rn7 and resolve custom install tsb_BED path issue"}},{"before":"0f14eff8b06dd3e874ca5fee608793f50eee8599","after":null,"ref":"refs/heads/rn7","pushedAt":"2024-02-14T23:04:57.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":null,"after":"0f14eff8b06dd3e874ca5fee608793f50eee8599","ref":"refs/heads/rn7","pushedAt":"2024-02-14T23:04:44.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"v1.2.25: Add rn7 and resolve custom install tsb_BED path issue","shortMessageHtmlLink":"v1.2.25: Add rn7 and resolve custom install tsb_BED path issue"}},{"before":"70db87d735adf43996440ecdb30f1c5453f0f6e3","after":null,"ref":"refs/heads/ebv","pushedAt":"2024-02-09T18:30:50.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":"9b12f7d6ba3641185c0259cf8eb1a7d05e553380","after":"518e22bbbd92a4035c0981a88ed0f7847e6c37cc","ref":"refs/heads/master","pushedAt":"2024-02-09T18:30:46.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Merge pull request #174 from AlexandrovLab/ebv\n\nUpdate v1.2.24: Fix ebv matrix generation","shortMessageHtmlLink":"Merge pull request #174 from AlexandrovLab/ebv"}},{"before":"89038783a0b1bf74888ea0b0afae791c5d64f814","after":null,"ref":"refs/heads/i171","pushedAt":"2024-02-09T06:18:01.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":null,"after":"70db87d735adf43996440ecdb30f1c5453f0f6e3","ref":"refs/heads/ebv","pushedAt":"2024-02-08T17:00:54.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Fix ebv matrix generation","shortMessageHtmlLink":"Fix ebv matrix generation"}},{"before":"daa5b28b8d6249120cf3eebdfd4580a7d786de4b","after":null,"ref":"refs/heads/docker","pushedAt":"2024-01-31T04:34:30.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":"411e2e83cffb7a6fdb2746cb188fd155f922bf53","after":"9b12f7d6ba3641185c0259cf8eb1a7d05e553380","ref":"refs/heads/master","pushedAt":"2024-01-31T04:34:22.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Merge pull request #173 from AlexandrovLab/docker\n\nUpgrade to v1.2.23","shortMessageHtmlLink":"Merge pull request #173 from AlexandrovLab/docker"}},{"before":null,"after":"daa5b28b8d6249120cf3eebdfd4580a7d786de4b","ref":"refs/heads/docker","pushedAt":"2024-01-31T04:22:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Upgrade to v1.2.23\n\nAdded to CLI:\n1. SV matrix generator\n2. CNV matrix generator\n\nAdditional changes:\n1. Added Dockerfile\n2. Modified reference_paths to accept a volume (closes #171)","shortMessageHtmlLink":"Upgrade to v1.2.23"}},{"before":"ee371a02e18bbb195eaec2434a308a7671cc1f14","after":null,"ref":"refs/heads/docker","pushedAt":"2024-01-31T04:21:19.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":null,"after":"ee371a02e18bbb195eaec2434a308a7671cc1f14","ref":"refs/heads/docker","pushedAt":"2024-01-31T04:19:06.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Upgrade to v1.2.23\n\nAdded to CLI:\n1. SV matrix generator\n2. CNV matrix generator\n\nAdditional changes:\n1. Added Dockerfile\n2. Modified reference_paths to accept a volume (closes #171)","shortMessageHtmlLink":"Upgrade to v1.2.23"}},{"before":"992531b7b73cc14ced594e15ef4303fb9024ef04","after":null,"ref":"refs/heads/docker","pushedAt":"2024-01-31T04:18:42.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":null,"after":"992531b7b73cc14ced594e15ef4303fb9024ef04","ref":"refs/heads/docker","pushedAt":"2024-01-31T04:17:52.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Upgrade to v1.2.23\n\nAdded to CLI:\n1. SV matrix generator\n2. CNV matrix generator\n\nAdditional changes:\n1. Added Dockerfile\n2. Modified reference_paths to accept a volume (closes #171)","shortMessageHtmlLink":"Upgrade to v1.2.23"}},{"before":"53821304022fe9f6fb20d902c286ded39db8484e","after":null,"ref":"refs/heads/docker","pushedAt":"2024-01-31T04:17:09.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":null,"after":"53821304022fe9f6fb20d902c286ded39db8484e","ref":"refs/heads/docker","pushedAt":"2024-01-31T04:16:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Upgrade to v1.2.23\n\nAdded to CLI:\n1. SV matrix generator\n2. CNV matrix generator\n\nAdditional changes:\n1. Added Dockerfile\n2. Modified reference_paths to accept a volume (closes #171)","shortMessageHtmlLink":"Upgrade to v1.2.23"}},{"before":null,"after":"89038783a0b1bf74888ea0b0afae791c5d64f814","ref":"refs/heads/i171","pushedAt":"2024-01-26T20:35:25.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Add support for volume for reference_paths","shortMessageHtmlLink":"Add support for volume for reference_paths"}},{"before":"d54700adb081ed84aa0eff32c4a856bdd221f6bf","after":null,"ref":"refs/heads/cli_updates","pushedAt":"2024-01-12T10:18:42.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"}},{"before":"8cdab463ce2dd39731653b4826cf4985888cbd34","after":"411e2e83cffb7a6fdb2746cb188fd155f922bf53","ref":"refs/heads/master","pushedAt":"2024-01-12T10:18:37.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"mdbarnesUCSD","name":null,"path":"/mdbarnesUCSD","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/22506723?s=80&v=4"},"commit":{"message":"Merge pull request #170 from AlexandrovLab/cli_updates\n\nv1.2.22: CLI installs reference genomes using the ReferenceGenomeMana…","shortMessageHtmlLink":"Merge pull request #170 from AlexandrovLab/cli_updates"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEO3l-XgA","startCursor":null,"endCursor":null}},"title":"Activity · AlexandrovLab/SigProfilerMatrixGenerator"}