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NetworkPainter

Introduction

NetworkPainter is a web-based software program for the visualization and analysis of network-scale biological data such as flow- and mass-cytometry deposited in the Cytobank database.

Free, hosted versions

NetworkPainter is freely available at Cytobank for use with data stored in Cytobank. NetworkPainter is also freely available at covert.stanford.edu for use with any uploaded data.

Getting help

Three tutorials videos and extensive documentation are available. Need more help? Please contact us at info@cytobank.org.

Installation

Instructions to install NetworkPainter on your own server are available here.

Documentation

Documentation for the NetworkPainter source code is available here. User help instructions and tutorials are available here.

License

NetworkPainter is distributed under the Attribution Assurance License.

Citing NetworkPainter

Please use the following reference to cite NetworkPainter:Karr JR, Guturu H, Chen EY, Blair SL, Irish JM, Kotecha N, Covert MW. NetworkPainter: dynamic intracellular pathway animation in Cytobank. BMC Bioinformatics 16, 1:172 (2015).

Development team

NetworkPainter was developed by Jonathan Karr, Harendra Guturu, Ed Chen, Stuart Blair, Jonathan Irish, Nikesh Kotecha, and Markus Covert at Stanford University and Cytobank Inc.

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Web-based software program creating and animating signaling network diagrams

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