Doc: Further fixes to doxygen docs

src/Doc/BuildWebDoc.cfg.in

@@ -337,7 +337,7 @@ EXTRACT_ANON_NSPACES   = NO
 # various overviews, but no documentation section is generated.
 # This option has no effect if EXTRACT_ALL is enabled.
 
-HIDE_UNDOC_MEMBERS     = NO
+HIDE_UNDOC_MEMBERS     = YES
 
 # If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all
 # undocumented classes that are normally visible in the class hierarchy.
@@ -500,7 +500,7 @@ SHOW_FILES             = NO
 # This will remove the Namespaces entry from the Quick Index
 # and from the Folder Tree View (if specified). The default is YES.
 
-SHOW_NAMESPACES        = YES
+SHOW_NAMESPACES        = NO
 
 # The FILE_VERSION_FILTER tag can be used to specify a program or script that
 # doxygen should invoke to get the current version for each file (typically from
@@ -647,7 +647,18 @@ EXCLUDE_PATTERNS       =*.moc.* \
 # wildcard * is used, a substring. Examples: ANamespace, AClass,
 # AClass::ANamespace, ANamespace::*Test
 
-EXCLUDE_SYMBOLS        =
+EXCLUDE_SYMBOLS        = __init__ \
+                         None \
+                         __setstate__ \
+                         __getstate__ \
+                         _* \
+                         boost \
+                         Wm4 \
+                         WildMagic4 \
+                         KDL \
+                         ap203* \
+                         Py \
+                         SIM 
 
 # The EXAMPLE_PATH tag can be used to specify one or more files or
 # directories that contain example code fragments that are included (see
@@ -857,7 +868,7 @@ HTML_COLORSTYLE_GAMMA  = 80
 # page will contain the date and time when the page was generated. Setting
 # this to NO can help when comparing the output of multiple runs.
 
-HTML_TIMESTAMP         = YES
+HTML_TIMESTAMP         = NO
 
 # If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes,
 # files or namespaces will be aligned in HTML using tables. If set to
@@ -1609,19 +1620,19 @@ DOT_FONTPATH           =
 # indirect inheritance relations. Setting this tag to YES will force the
 # the CLASS_DIAGRAMS tag to NO.
 
-CLASS_GRAPH            = YES
+CLASS_GRAPH            = NO
 
 # If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen
 # will generate a graph for each documented class showing the direct and
 # indirect implementation dependencies (inheritance, containment, and
 # class references variables) of the class with other documented classes.
 
-COLLABORATION_GRAPH    = YES
+COLLABORATION_GRAPH    = NO
 
 # If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen
 # will generate a graph for groups, showing the direct groups dependencies
 
-GROUP_GRAPHS           = YES
+GROUP_GRAPHS           = NO
 
 # If the UML_LOOK tag is set to YES doxygen will generate inheritance and
 # collaboration diagrams in a style similar to the OMG's Unified Modeling
@@ -1632,21 +1643,21 @@ UML_LOOK               = NO
 # If set to YES, the inheritance and collaboration graphs will show the
 # relations between templates and their instances.
 
-TEMPLATE_RELATIONS     = YES
+TEMPLATE_RELATIONS     = NO
 
 # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT
 # tags are set to YES then doxygen will generate a graph for each documented
 # file showing the direct and indirect include dependencies of the file with
 # other documented files.
 
-INCLUDE_GRAPH          = YES
+INCLUDE_GRAPH          = NO
 
 # If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and
 # HAVE_DOT tags are set to YES then doxygen will generate a graph for each
 # documented header file showing the documented files that directly or
 # indirectly include this file.
 
-INCLUDED_BY_GRAPH      = YES
+INCLUDED_BY_GRAPH      = NO
 
 # If the CALL_GRAPH and HAVE_DOT options are set to YES then
 # doxygen will generate a call dependency graph for every global function
@@ -1667,14 +1678,14 @@ CALLER_GRAPH           = NO
 # If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen
 # will graphical hierarchy of all classes instead of a textual one.
 
-GRAPHICAL_HIERARCHY    = YES
+GRAPHICAL_HIERARCHY    = NO
 
 # If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES
 # then doxygen will show the dependencies a directory has on other directories
 # in a graphical way. The dependency relations are determined by the #include
 # relations between the files in the directories.
 
-DIRECTORY_GRAPH        = YES
+DIRECTORY_GRAPH        = NO
 
 # The DOT_IMAGE_FORMAT tag can be used to set the image format of the images
 # generated by dot. Possible values are png, jpg, or gif
@@ -1727,13 +1738,13 @@ DOT_TRANSPARENT        = NO
 
 # support this, this feature is disabled by default.
 
-DOT_MULTI_TARGETS      = YES
+DOT_MULTI_TARGETS      = NO
 
 # If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will
 # generate a legend page explaining the meaning of the various boxes and
 # arrows in the dot generated graphs.
 
-GENERATE_LEGEND        = YES
+GENERATE_LEGEND        = NO
 
 # If the DOT_CLEANUP tag is set to YES (the default) Doxygen will
 # remove the intermediate dot files that are used to generate

src/Doc/CMakeLists.txt

@@ -43,6 +43,7 @@ if(DOXYGEN_FOUND)
     set(        DOXYGEN_EXCLUDE_DIR ${CMAKE_SOURCE_DIR}/src/Tools)
     list(APPEND DOXYGEN_EXCLUDE_DIR ${CMAKE_SOURCE_DIR}/src/3rdParty/CxImage)
     list(APPEND DOXYGEN_EXCLUDE_DIR ${CMAKE_SOURCE_DIR}/src/3rdParty/salomesmesh)
+    list(APPEND DOXYGEN_EXCLUDE_DIR ${CMAKE_SOURCE_DIR}/src/Mod/Arch/Dice3DS)
     # deprecated modules
     list(APPEND DOXYGEN_EXCLUDE_DIR ${CMAKE_SOURCE_DIR}/src/Mod/Assembly)
     list(APPEND DOXYGEN_EXCLUDE_DIR ${CMAKE_SOURCE_DIR}/src/Mod/Cam)

src/Doc/templates/doxy-boot.js

@@ -66,8 +66,6 @@ $( document ).ready(function() {
 	});
 
     // source code github links
-    console.log("links:");
-    console.log($('li:contains("FreeCAD/src/")'));
     $('li:contains("FreeCAD/src/")').each(function(){
         var lk = '<a href="https://github.com/FreeCAD/FreeCAD/blob/master' + $(this).html().substr(7) + '">';
         lk += $(this).html();

src/Doc/templates/header.html

@@ -46,7 +46,7 @@
                         <li><a href="modules.html" title="List of FreeCAD Modules">Modules</a></li>
                         <!-- <li><a href="namespaces.html" title="Namespaces">Namespaces</a></li> -->
                         <li><a href="annotated.html" title="List of namespaces and classes">Class list</a></li>
-                        <li><a href="hierarchy.html" title="Tree view of classes">Class hierarchy</a></li>
+                        <!-- <li><a href="hierarchy.html" title="Tree view of classes">Class hierarchy</a></li> -->
                         <li><a href="https://github.com/FreeCAD/FreeCAD" title="Browse the source code on GitHub">Source code</a></li>
                     </ul>
                     <ul class="nav navbar-nav navbar-right">

src/Mod/Import/import.dox

@@ -1,3 +1,5 @@
 /** \defgroup IMPORT Import
- *  \ingroup UTILITIES */
+ *  \ingroup UTILITIES 
+ *  brief Utilities to import various file formats using OpenCasCade OCAF
+ */
 

src/Mod/Part/BOPTools/__init__.py

@@ -27,6 +27,9 @@
 BooleanFragments, Slice and XOR features of Part Workbench. Useful for other custom 
 BOP-like operations"""
 
+## @package BOPTools
+#  \ingroup PART
+
 __all__ = [
 "GeneralFuseResult",
 "JoinAPI",

src/Mod/Ship/ship.dox

@@ -1,5 +1,5 @@
 /** \defgroup SHIP Ship
- *  \ingroup UTILITIES 
+ *  \ingroup PYTHONWORKBENCHES 
  *  \brief Tools towork with ship hulls
  */