{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":73920157,"defaultBranch":"master","name":"InSilicoSeq","ownerLogin":"HadrienG","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2016-11-16T12:55:51.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/7337110?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1712890698.0","currentOid":""},"activityList":{"items":[{"before":null,"after":"34112a1a913dfe73cb195941436064b96ae0c43e","ref":"refs/heads/dependabot/pip/idna-3.7","pushedAt":"2024-04-12T02:58:18.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump idna from 3.4 to 3.7\n\nBumps [idna](https://github.com/kjd/idna) from 3.4 to 3.7.\n- [Release notes](https://github.com/kjd/idna/releases)\n- [Changelog](https://github.com/kjd/idna/blob/master/HISTORY.rst)\n- [Commits](https://github.com/kjd/idna/compare/v3.4...v3.7)\n\n---\nupdated-dependencies:\n- dependency-name: idna\n dependency-type: indirect\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump idna from 3.4 to 3.7"}},{"before":null,"after":"ec23010d450880d8e00c397a21d24fcd2edd7ec5","ref":"refs/heads/dependabot/pip/black-24.3.0","pushedAt":"2024-03-20T17:38:58.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"dependabot[bot]","name":null,"path":"/apps/dependabot","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/29110?s=80&v=4"},"commit":{"message":"Bump black from 23.11.0 to 24.3.0\n\nBumps [black](https://github.com/psf/black) from 23.11.0 to 24.3.0.\n- [Release notes](https://github.com/psf/black/releases)\n- [Changelog](https://github.com/psf/black/blob/main/CHANGES.md)\n- [Commits](https://github.com/psf/black/compare/23.11.0...24.3.0)\n\n---\nupdated-dependencies:\n- dependency-name: black\n dependency-type: direct:development\n...\n\nSigned-off-by: dependabot[bot] ","shortMessageHtmlLink":"Bump black from 23.11.0 to 24.3.0"}},{"before":null,"after":"cd2e1a6e882aec58d7ed83089c27e9043dd05af2","ref":"refs/heads/experiment/reference-memory-fix","pushedAt":"2024-03-18T15:51:24.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ThijsMaas","name":"Thijs","path":"/ThijsMaas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32161611?s=80&v=4"},"commit":{"message":"Add seqio index genome loading","shortMessageHtmlLink":"Add seqio index genome loading"}},{"before":"8f16beb4346853860db2ce6f1ac287fb825daa16","after":"e2bc0d89691ee63f9cf33ee097b44a2fe37fbd5f","ref":"refs/heads/master","pushedAt":"2024-02-23T08:42:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"version bump (2.0.1)","shortMessageHtmlLink":"version bump (2.0.1)"}},{"before":"418c92bf27813c46c838c0c0ffa38d0ff207ec8d","after":"8f16beb4346853860db2ce6f1ac287fb825daa16","ref":"refs/heads/master","pushedAt":"2024-02-23T08:41:08.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"Merge pull request #255 from HadrienG/cov_fix\n\nfix crash when using --coverage (#253)","shortMessageHtmlLink":"Merge pull request #255 from HadrienG/cov_fix"}},{"before":null,"after":"7858571967a72385157b1a56c619fe737727204c","ref":"refs/heads/cov_fix","pushedAt":"2024-02-23T08:38:29.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"fix crash when using --coverage (#253)","shortMessageHtmlLink":"fix crash when using --coverage (#253)"}},{"before":"e335ca9ff1a0589e6545c9edd666be09726859ae","after":"418c92bf27813c46c838c0c0ffa38d0ff207ec8d","ref":"refs/heads/master","pushedAt":"2024-02-22T10:23:40.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"Merge pull request #251 from HadrienG/dockerfile-fix\n\nFixed the Dockerfile","shortMessageHtmlLink":"Merge pull request #251 from HadrienG/dockerfile-fix"}},{"before":"5e5b939abb00a9c3360c7309ef929a71c388f13e","after":"49bc79309b568d0c1378487ebeeed5346f0fb83a","ref":"refs/heads/dockerfile-fix","pushedAt":"2024-02-22T10:20:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"updated docker instructions on readthedocs","shortMessageHtmlLink":"updated docker instructions on readthedocs"}},{"before":"de245f17dbbcf075c2b5ac926fdb49c4826bf92a","after":"5e5b939abb00a9c3360c7309ef929a71c388f13e","ref":"refs/heads/dockerfile-fix","pushedAt":"2024-02-20T15:26:13.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"StefanLelieveld","name":null,"path":"/StefanLelieveld","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95419080?s=80&v=4"},"commit":{"message":"Updated README.md to include the link to the biocontainers repo","shortMessageHtmlLink":"Updated README.md to include the link to the biocontainers repo"}},{"before":"d0e18884a3de07d96ff84ca97d38aacbd2e9e998","after":"de245f17dbbcf075c2b5ac926fdb49c4826bf92a","ref":"refs/heads/dockerfile-fix","pushedAt":"2024-02-19T14:33:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"StefanLelieveld","name":null,"path":"/StefanLelieveld","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95419080?s=80&v=4"},"commit":{"message":"Added script to build multi-architecture (AMD + ARM) docker image and push to registry","shortMessageHtmlLink":"Added script to build multi-architecture (AMD + ARM) docker image and…"}},{"before":"a8a79604a444703e4d6791653a82eb349a07050a","after":null,"ref":"refs/heads/docker-file-fix","pushedAt":"2024-02-19T10:09:49.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"StefanLelieveld","name":null,"path":"/StefanLelieveld","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95419080?s=80&v=4"}},{"before":null,"after":"d0e18884a3de07d96ff84ca97d38aacbd2e9e998","ref":"refs/heads/dockerfile-fix","pushedAt":"2024-02-19T10:07:36.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"StefanLelieveld","name":null,"path":"/StefanLelieveld","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95419080?s=80&v=4"},"commit":{"message":"Updated dockerfile","shortMessageHtmlLink":"Updated dockerfile"}},{"before":null,"after":"a8a79604a444703e4d6791653a82eb349a07050a","ref":"refs/heads/docker-file-fix","pushedAt":"2024-02-19T09:42:13.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"StefanLelieveld","name":null,"path":"/StefanLelieveld","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95419080?s=80&v=4"},"commit":{"message":"Updated version from 1.6.0 to 2.0.0","shortMessageHtmlLink":"Updated version from 1.6.0 to 2.0.0"}},{"before":"d25d8409802aeaf9e7564a6fa4e52b203a4e0b38","after":"e335ca9ff1a0589e6545c9edd666be09726859ae","ref":"refs/heads/master","pushedAt":"2024-02-15T15:33:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"version bump (2.0.0)","shortMessageHtmlLink":"version bump (2.0.0)"}},{"before":"1687d52bf242d80de0bb8cfa17ed392874858885","after":"d25d8409802aeaf9e7564a6fa4e52b203a4e0b38","ref":"refs/heads/master","pushedAt":"2024-02-15T15:31:20.000Z","pushType":"pr_merge","commitsCount":95,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"Merge pull request #240 from HadrienG/dev\n\nNew release","shortMessageHtmlLink":"Merge pull request #240 from HadrienG/dev"}},{"before":"2150de49649d941131579d5cad81705236ca0f71","after":"0b80d8e7837dcbe01e7c1f996e7e240e6b2c1b55","ref":"refs/heads/dev","pushedAt":"2024-02-15T15:29:08.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"add thijs and stefan as authors on the doc website","shortMessageHtmlLink":"add thijs and stefan as authors on the doc website"}},{"before":"412dfc74f59115fb15d959d144f6d9680215d1f2","after":"2150de49649d941131579d5cad81705236ca0f71","ref":"refs/heads/dev","pushedAt":"2024-02-15T15:24:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"update model qualities and read length","shortMessageHtmlLink":"update model qualities and read length"}},{"before":"5588ad12627d41b421bb403fb08561b29f74c170","after":"412dfc74f59115fb15d959d144f6d9680215d1f2","ref":"refs/heads/dev","pushedAt":"2024-02-15T13:20:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"update readthedocs config","shortMessageHtmlLink":"update readthedocs config"}},{"before":"f03eb94c8335cad9f1c5a312f4f81482ff04fff7","after":"5588ad12627d41b421bb403fb08561b29f74c170","ref":"refs/heads/dev","pushedAt":"2024-02-15T13:13:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"update readthedocs config","shortMessageHtmlLink":"update readthedocs config"}},{"before":"b3ece204eb1868e5034d545a071350389f75687b","after":"f03eb94c8335cad9f1c5a312f4f81482ff04fff7","ref":"refs/heads/dev","pushedAt":"2024-02-15T13:02:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"update iss generate doc","shortMessageHtmlLink":"update iss generate doc"}},{"before":"cd714b16ee3609a7cad35f3c4af079db30cb7346","after":"b3ece204eb1868e5034d545a071350389f75687b","ref":"refs/heads/dev","pushedAt":"2024-02-15T09:39:55.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"ignore case in moel names","shortMessageHtmlLink":"ignore case in moel names"}},{"before":"e8ff9cade9438ed065de52b2696168284358f76e","after":"cd714b16ee3609a7cad35f3c4af079db30cb7346","ref":"refs/heads/dev","pushedAt":"2024-02-13T13:48:50.000Z","pushType":"pr_merge","commitsCount":4,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"Merge pull request #249 from HadrienG/nextSeq-miSeq-error-models\n\nNew MiSeq and NextSeq error models","shortMessageHtmlLink":"Merge pull request #249 from HadrienG/nextSeq-miSeq-error-models"}},{"before":"fe9c5f40d2bce30b8a3462f14f322865a4e3be0d","after":"cac4365cfdd6edae1df0003fa05abdf573318f71","ref":"refs/heads/nextSeq-miSeq-error-models","pushedAt":"2024-02-12T09:30:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"StefanLelieveld","name":null,"path":"/StefanLelieveld","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/95419080?s=80&v=4"},"commit":{"message":"removed types from precomputed_error_models","shortMessageHtmlLink":"removed types from precomputed_error_models"}},{"before":"fb425d15387b8e8d8fcaec33c7754582f9000006","after":"e8ff9cade9438ed065de52b2696168284358f76e","ref":"refs/heads/dev","pushedAt":"2024-02-12T05:49:37.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"HadrienG","name":"Hadrien Gourlé","path":"/HadrienG","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7337110?s=80&v=4"},"commit":{"message":"Merge pull request #250 from HadrienG/storing-mutations\n\nSaving inserted mutations/sequencing errors to a vcf file","shortMessageHtmlLink":"Merge pull request #250 from HadrienG/storing-mutations"}},{"before":"87cf6043ff651e80845afdee524712bdd2fe599c","after":"886fdeab668606a0f2661d1984e435c23db14372","ref":"refs/heads/storing-mutations","pushedAt":"2024-02-07T08:48:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ThijsMaas","name":"Thijs","path":"/ThijsMaas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32161611?s=80&v=4"},"commit":{"message":"snp -> sub","shortMessageHtmlLink":"snp -> sub"}},{"before":"7108eab50a387db6de06d7681ced42b3c8cd93f4","after":"87cf6043ff651e80845afdee524712bdd2fe599c","ref":"refs/heads/storing-mutations","pushedAt":"2024-02-05T19:00:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ThijsMaas","name":"Thijs","path":"/ThijsMaas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32161611?s=80&v=4"},"commit":{"message":"comment","shortMessageHtmlLink":"comment"}},{"before":"823fd759d2a211000ba6e2a49141b6dbdaa8f640","after":"7108eab50a387db6de06d7681ced42b3c8cd93f4","ref":"refs/heads/storing-mutations","pushedAt":"2024-02-05T18:56:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ThijsMaas","name":"Thijs","path":"/ThijsMaas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32161611?s=80&v=4"},"commit":{"message":"Add indel storing and fix cleanup","shortMessageHtmlLink":"Add indel storing and fix cleanup"}},{"before":"968d6e77bcb08b71bc7486c8e3cc82a79b4a54c3","after":"823fd759d2a211000ba6e2a49141b6dbdaa8f640","ref":"refs/heads/storing-mutations","pushedAt":"2024-02-05T18:45:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ThijsMaas","name":"Thijs","path":"/ThijsMaas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32161611?s=80&v=4"},"commit":{"message":"Fix mut sequence output","shortMessageHtmlLink":"Fix mut sequence output"}},{"before":"8633b9f0384d06563c6a5bfbc58ed8e98306872e","after":"968d6e77bcb08b71bc7486c8e3cc82a79b4a54c3","ref":"refs/heads/storing-mutations","pushedAt":"2024-02-05T18:27:03.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ThijsMaas","name":"Thijs","path":"/ThijsMaas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32161611?s=80&v=4"},"commit":{"message":"format and fix","shortMessageHtmlLink":"format and fix"}},{"before":null,"after":"8633b9f0384d06563c6a5bfbc58ed8e98306872e","ref":"refs/heads/storing-mutations","pushedAt":"2024-02-05T17:57:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"ThijsMaas","name":"Thijs","path":"/ThijsMaas","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/32161611?s=80&v=4"},"commit":{"message":"init storing mutations","shortMessageHtmlLink":"init storing mutations"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAELq9QQwA","startCursor":null,"endCursor":null}},"title":"Activity · HadrienG/InSilicoSeq"}