Adaptive Immunity Induces Mutually Beneficial Interactions With Gut Fungi

Kyla Ost, et. al 2021. Nature.

Abstract: to be added on publication

Contents: Methods for analysis of RNAseq of C. albicans SC5314 monocolonized in WT and Rag1-/- mice. Mapping identifiers between the candidagenome.org and other genome databases, as well custom gene set enrichment analysis with published gene sets.

• code: R and shell scripts for sequence processing, C. albicans genome database manipulations and GSEA with published datasets.
• data: Gene identifier maps between NCBI and candidagenome.org, C. albicans genome database package