2f53f21f23f0a13e4664205716d2b730335ff0d3 Arjun Sanyal arjun.sanyal@childrens.harvard.edu http://github.com/arjun/chip-ruby/commit/572030169f0c387879cfea5b4599122494a8cb0a 572030169f0c387879cfea5b4599122494a8cb0a 2009-06-24T12:44:37-07:00 2009-06-24T12:44:37-07:00 debugged filesize issue, adding data f4ac8e2ea4e95632682feea4ff6bd42e9c504d4f Arjun Sanyal arjun.sanyal@childrens.harvard.edu eedd8bd38ff417d312e4f5711971c21c7872f6f7 Arjun Sanyal arjun.sanyal@childrens.harvard.edu http://github.com/arjun/chip-ruby/commit/2f53f21f23f0a13e4664205716d2b730335ff0d3 2f53f21f23f0a13e4664205716d2b730335ff0d3 2009-06-24T10:59:19-07:00 2009-06-24T10:59:19-07:00 Fix file closing bug 72d831eac427bb2f36715a6993dc2293e2980502 Arjun Sanyal arjun.sanyal@childrens.harvard.edu 4a9458e0ec488ccb2d4cf0ef3f9f9ab0d6b77583 Arjun Sanyal arjun.sanyal@childrens.harvard.edu http://github.com/arjun/chip-ruby/commit/eedd8bd38ff417d312e4f5711971c21c7872f6f7 eedd8bd38ff417d312e4f5711971c21c7872f6f7 2009-06-18T16:11:56-07:00 2009-06-18T16:11:56-07:00 Various updates 3222934b24aa2b6932ea9cdd9188175eb191820f Arjun Sanyal arjun.sanyal@childrens.harvard.edu 76da7c6368846c82816f51a63b627d7f2bc6d464 arjun arjun@arjun-sanyals-imac.local http://github.com/arjun/chip-ruby/commit/4a9458e0ec488ccb2d4cf0ef3f9f9ab0d6b77583 4a9458e0ec488ccb2d4cf0ef3f9f9ab0d6b77583 2008-05-21T11:57:45-07:00 2008-05-21T11:57:45-07:00 some cleanup, docs, and work on CEL files 77b07c81d221814baa47f8c6fe01dca2b82bcfb0 arjun arjun@arjun-sanyals-imac.local 9a5da3fa55b8ac559e1529b903f61408c085be0b arjun arjun@arjun-sanyals-imac.local http://github.com/arjun/chip-ruby/commit/76da7c6368846c82816f51a63b627d7f2bc6d464 76da7c6368846c82816f51a63b627d7f2bc6d464 2008-04-28T11:58:14-07:00 2008-04-28T11:58:14-07:00 cast wide strings to normal, abstract writing to csv 613afb5cbda5ef7315d3a3639cb1f46df95a22bd arjun arjun@arjun-sanyals-imac.local 79cb38405e446aecbfa74d0e0fc32bbfdba24f4a arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/9a5da3fa55b8ac559e1529b903f61408c085be0b 9a5da3fa55b8ac559e1529b903f61408c085be0b 2008-04-24T12:45:42-07:00 2008-04-24T12:45:42-07:00 refactored. now cleanly inherits for both Genotyping and Expression CHP files b8cd33095fd7154569a9b8340cad07f9f099cf51 arjun arjun@mac001ec20d778f.myhome.westell.com 6f959894162c820c094d27b3a66acea2686e1e6a arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/79cb38405e446aecbfa74d0e0fc32bbfdba24f4a 79cb38405e446aecbfa74d0e0fc32bbfdba24f4a 2008-04-23T15:02:07-07:00 2008-04-23T15:02:07-07:00 add yaml output 167fcdd3f0e164aa5dc4b1fa7104a037b89e2acc arjun arjun@mac001ec20d778f.myhome.westell.com a36a71ac4f69c9c512313fe64b016602261b4cc3 arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/6f959894162c820c094d27b3a66acea2686e1e6a 6f959894162c820c094d27b3a66acea2686e1e6a 2008-04-22T14:29:41-07:00 2008-04-22T14:29:41-07:00 convert hash keys to symbols, can now read expression results from MAS5 but needs to be data-driven 62b7eb94d8ace9d0da5a60bf6930c9bf321fed42 arjun arjun@mac001ec20d778f.myhome.westell.com 1976319888095237220a284aea6696ad858b7932 arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/a36a71ac4f69c9c512313fe64b016602261b4cc3 a36a71ac4f69c9c512313fe64b016602261b4cc3 2008-04-22T12:01:21-07:00 2008-04-22T12:01:21-07:00 rm DS_Store fb3f9611cd2edb439ce3e1633020ba3c009878e4 arjun arjun@mac001ec20d778f.myhome.westell.com 69fb4a4a3c1099eef4d30933b853090b14018c48 arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/1976319888095237220a284aea6696ad858b7932 1976319888095237220a284aea6696ad858b7932 2008-04-22T11:52:02-07:00 2008-04-22T11:52:02-07:00 clean up verbosity, starting tests 26d36733cd090227f07daf0fb9eec8035bb8b311 arjun arjun@mac001ec20d778f.myhome.westell.com 9207e04dd1f790acba21936e5f14321adfc8363d arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/69fb4a4a3c1099eef4d30933b853090b14018c48 69fb4a4a3c1099eef4d30933b853090b14018c48 2008-04-17T16:24:49-07:00 2008-04-17T16:24:49-07:00 add csv output, support for multiple data_groups and data_sets 4e44a010552a68f69a38f785a4966769bd994180 arjun arjun@mac001ec20d778f.myhome.westell.com db95b37416fb11af5651c3feb5bbc4f9fa04a1da arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/9207e04dd1f790acba21936e5f14321adfc8363d 9207e04dd1f790acba21936e5f14321adfc8363d 2008-04-17T12:22:46-07:00 2008-04-17T12:22:46-07:00 rm old cel files, more work on parent file headers and parameters 283f1649577bfe369ced2804e027ed8f16e4cc67 arjun arjun@mac001ec20d778f.myhome.westell.com 7c274435f639da7b60642946cf3c24446d91dfa1 arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/db95b37416fb11af5651c3feb5bbc4f9fa04a1da db95b37416fb11af5651c3feb5bbc4f9fa04a1da 2008-04-17T12:17:50-07:00 2008-04-17T12:17:50-07:00 add correct cel files 573f7cb5388592d417f2c727229d834155e88abd arjun arjun@mac001ec20d778f.myhome.westell.com a17119cc22d67c1998040d4a3c782f77e6f43996 arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/7c274435f639da7b60642946cf3c24446d91dfa1 7c274435f639da7b60642946cf3c24446d91dfa1 2008-04-16T12:42:33-07:00 2008-04-16T12:42:33-07:00 set parser exec bit 4f7c9b9aa48287b3063706208c580b45be01e7fa arjun arjun@mac001ec20d778f.myhome.westell.com 629fce4d5558b43c487ebee06b4355ba23fd3795 arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/a17119cc22d67c1998040d4a3c782f77e6f43996 a17119cc22d67c1998040d4a3c782f77e6f43996 2008-04-16T12:39:04-07:00 2008-04-16T12:39:04-07:00 update readme 8eb806ec77945760081c83af2808edb417869695 arjun arjun@mac001ec20d778f.myhome.westell.com e5dcf7873616ed410308e6ec42b0b7f1e65c713b arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/629fce4d5558b43c487ebee06b4355ba23fd3795 629fce4d5558b43c487ebee06b4355ba23fd3795 2008-04-16T12:31:47-07:00 2008-04-16T12:31:47-07:00 rm DS_Store ee191ce2617671c0c9838f14c54dac9bf4777bde arjun arjun@mac001ec20d778f.myhome.westell.com 3336ccdba170a3c38a796a2360d70bd14cac1d71 arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/e5dcf7873616ed410308e6ec42b0b7f1e65c713b e5dcf7873616ed410308e6ec42b0b7f1e65c713b 2008-04-16T12:15:49-07:00 2008-04-16T12:15:49-07:00 add rdoc docs cc0bef7209ae585c540fd8f2d5422182f43f105f arjun arjun@mac001ec20d778f.myhome.westell.com 6b2c2c40d44a7bb54568a207c05a07171b34fbe8 arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/3336ccdba170a3c38a796a2360d70bd14cac1d71 3336ccdba170a3c38a796a2360d70bd14cac1d71 2008-04-16T12:08:51-07:00 2008-04-16T12:08:51-07:00 rest of files 37a5cd18a1b8260d8b3b0641b6d83f3db5ddd809 arjun arjun@mac001ec20d778f.myhome.westell.com 2e351489e8faae308063ad36ee569ac99dd53a2c arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/6b2c2c40d44a7bb54568a207c05a07171b34fbe8 6b2c2c40d44a7bb54568a207c05a07171b34fbe8 2008-04-16T12:08:17-07:00 2008-04-16T12:08:17-07:00 updated readme b83158ca0bbf6b9db522090ce1a55ff7d93f5053 arjun arjun@mac001ec20d778f.myhome.westell.com arjun arjun@mac001ec20d778f.myhome.westell.com http://github.com/arjun/chip-ruby/commit/2e351489e8faae308063ad36ee569ac99dd53a2c 2e351489e8faae308063ad36ee569ac99dd53a2c 2008-04-16T12:01:51-07:00 2008-04-16T12:01:51-07:00 first commit 543b9bebdc6bd5c4b22136034a95dd097a57d3dd arjun arjun@mac001ec20d778f.myhome.westell.com