ImmuneDB is a Python module that facilitates efficient storage and analysis of high-throughput B- and T-cell sequence data.
Installation and usage instructions can be found at immunedb.com
Basic questions regarding installing and running ImmuneDB can be emailed to aaron.rosenfeld@pennmedicine.upenn.edu. Bugs and feature requests should be submitted as Issues. I try to respond to both within 2 business days if possible.
If you use ImmuneDB, please cite the tool as:
Rosenfeld, A. M., Meng, W., Luning Prak, E. T., Hershberg, U., ImmuneDB, a Novel Tool for the Analysis, Storage, and Dissemination of Immune Repertoire Sequencing Data. Frontiers in Immunology 9 (2018).
ImmuneDB was originally announced previously in:
Rosenfeld, A. M., Meng, W., Luning Prak, E. T., Hershberg, U., ImmuneDB: a system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data, Bioinformatics 33 (2016), no. 2, 292–293.