GitHub - barricklab/breseq: breseq is a computational pipeline for finding mutations relative to a reference sequence in short-read DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.

Users: Please see the online breseq documentation

Developers: Please see information on the GitHub Wiki

Name		Name	Last commit message	Last commit date
Latest commit History 2,171 Commits
aux_build/m4		aux_build/m4
extern		extern
ports		ports
src		src
tests		tests
.gitignore		.gitignore
.travis.yml		.travis.yml
AUTHORS		AUTHORS
COPYING		COPYING
ChangeLog		ChangeLog
DEVELOPER		DEVELOPER
LICENSE		LICENSE
Makefile.am		Makefile.am
NEWS		NEWS
README		README
README-BINARY		README-BINARY
README.md		README.md
binarydist.sh		binarydist.sh
bootstrap.sh		bootstrap.sh
configure.ac		configure.ac
dev-environment.yml		dev-environment.yml
run-environment.yml		run-environment.yml

barricklab/breseq