updated MCS solution count in the VF lib, depricated turbo MCS and pr…

…ovided methods for timeout Signed-off-by: Syed Asad Rahman <s9asad@gmail.com> Signed-off-by: Rajarshi Guha <rajarshi.guha@gmail.com>
cdk · May 20, 2010 · c4d3bf9 · c4d3bf9
1 parent ed04f25
commit c4d3bf9
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Showing 6 changed files with 62 additions and 414 deletions.
diff --git a/src/main/org/openscience/cdk/smsd/algorithm/vflib/VFlibMCSHandler.java b/src/main/org/openscience/cdk/smsd/algorithm/vflib/VFlibMCSHandler.java
@@ -274,7 +274,6 @@ private void searchVFMCSMappings() {
             vfLibSolutions = new ArrayList<Map<INode, IAtom>>(mapper.getMaps(ac1));
             RONP = false;
         }
-
         setVFMCSMappings(RONP, query);
         this.vfMCSSize = allMCSCopy.isEmpty() ? 0 : allMCSCopy.get(0).size();
     }

diff --git a/src/main/org/openscience/cdk/smsd/algorithm/vflib/VFlibTurboMCSHandler.java b/src/main/org/openscience/cdk/smsd/algorithm/vflib/VFlibTurboMCSHandler.java