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Computational biology resource repositories

Resources contributed by various computational biology groups at Columbia University Medical Center

Popular repositories

  1. xqtl-protocol xqtl-protocol Public

    Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium

    Jupyter Notebook 29 40

  2. bioworkflows bioworkflows Public

    In-house computational biology workflows at Columbia Neurology

    Jupyter Notebook 26 41

  3. pecotmr pecotmr Public

    Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.

    C++ 5 11

  4. xqtl-data xqtl-data Public

    Molecular QTL data resource developed by ADSP Functional Genomics Consortium

    Jupyter Notebook 2 2

  5. dsc dsc Public

    Forked from stephenslab/dsc

    Repo for Dynamic Statistical Comparisons project

    Python 1

  6. FunGenKit FunGenKit Public

    Jupyter Notebook

Repositories

Showing 8 of 8 repositories
  • xqtl-protocol Public

    Molecular QTL analysis protocol developed by ADSP Functional Genomics Consortium

    Jupyter Notebook 29 MIT 40 66 (5 issues need help) 0 Updated Apr 25, 2024
  • pecotmr Public

    Pair-wise enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.

    C++ 5 11 3 1 Updated Apr 25, 2024
  • handson-tutorials Public

    Computer lab tutorials on statistical genetics and omics data science, contributed by various members from the community interested in developing training material for the next generation scientists

    Jupyter Notebook 0 4 0 0 Updated Apr 22, 2024
  • xqtl-data Public

    Molecular QTL data resource developed by ADSP Functional Genomics Consortium

    Jupyter Notebook 2 2 0 2 Updated Apr 18, 2024
  • bioworkflows Public

    In-house computational biology workflows at Columbia Neurology

    Jupyter Notebook 26 41 6 2 Updated Apr 11, 2024
  • simxQTL Public

    In house simulation R package to support investigations of various QTL association methods

    R 0 MIT 2 1 0 Updated Feb 26, 2024
  • FunGenKit Public
    Jupyter Notebook 0 MIT 0 0 0 Updated Dec 12, 2023
  • dsc Public Forked from stephenslab/dsc

    Repo for Dynamic Statistical Comparisons project

    Python 1 MIT 12 6 0 Updated Feb 24, 2022

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