@@ -51,19 +51,6 @@ from Bio import File email = None -def query(cmd, db, cgi='http://www.ncbi.nlm.nih.gov/sites/entrez', - **keywds): - """Query Entrez and return a handle to the HTML results (DEPRECATED). - - See the online documentation for an explanation of the parameters: - http://www.ncbi.nlm.nih.gov/books/bv.fcgi?rid=helplinks.chapter.linkshelp - - Return a handle to the results. - - Raises an IOError exception if there's a network error. - """ - import warnings - warnings.warn("Bio.Entrez.query is deprecated, since it breaks NCBI's rule to only use the E-Utilities URL.", DeprecationWarning) # XXX retmode? def epost(db, **keywds): @@ -106,7 +93,7 @@ def efetch(db, **keywds): for key in keywds : if key.lower()=="rettype" and keywds[key].lower()=="genbank" : import warnings - warnings.warn('As of Easter 2009, Entrez EFtech no longer ' + warnings.warn('As of Easter 2009, Entrez EFetch no longer ' 'supports the unofficial return type "genbank", ' 'use "gb" or "gp" instead.', DeprecationWarning) if db.lower()=="protein" : Bio/Entrez/__init__.py ffac788b7459fb8acae1a7e613b636ab7ea14df5 mdehoon mdehoon http://github.com/etal/biopython/commit/7c6a87330b8df20c3928e2baca6e87362b7c68e2 7c6a87330b8df20c3928e2baca6e87362b7c68e2 2009-09-09T21:05:44-07:00 2009-09-09T21:05:44-07:00 Removing functions that were deprecated more than a year ago. d8f780583d727c46e8249e7c33102acec7db3bfc mdehoon mdehoon