Pinned

1. philres/ngmlr philres/ngmlr Public

   NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

   C++ 284 41

2. Cibiv/NextGenMap Cibiv/NextGenMap Public

   NextGenMap is a flexible highly sensitive short read mapping tool that handles much higher mismatch rates than comparable algorithms while still outperforming them in terms of runtime. This allows …

   C++ 85 9

3. Sniffles Sniffles Public

   Structural variation caller using third generation sequencing

   Python 507 83

4. schatzlab/genomescope schatzlab/genomescope Public

   Fast genome analysis from unassembled short reads

   JavaScript 229 55

5. SURVIVOR SURVIVOR Public

   Toolset for SV simulation, comparison and filtering

   C++ 327 45

6. Cibiv/Teaser Cibiv/Teaser Public

   A tool to benchmark mappers and different parameters within minutes

   HTML 43 9