ggonnella / genometools forked from gordon/genometools

GenomeTools genome analysis system.

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file .gitignore Thu Oct 01 10:33:09 -0700 2009 add HMMER external source dir to .gitignore [satta]
file CHANGELOG Thu Nov 19 05:40:00 -0800 2009 update CHANGELOG [Gordon Gremme]
file CONTRIBUTORS Thu Feb 12 07:23:39 -0800 2009 Merge branch 'master' into ltrdigest-encseq Co... [satta]
file INSTALL Wed Nov 18 07:10:05 -0800 2009 mention Windows building in INSTALL [satta]
file LICENSE Mon Jan 12 08:37:35 -0800 2009 welcome GenomeTools to 2009! [Gordon Gremme]
file Makefile Thu Oct 01 08:04:44 -0700 2009 make track order sortable [satta]
file README Tue Apr 28 12:17:34 -0700 2009 update README [Gordon Gremme]
file TODO Sun Aug 02 11:31:27 -0700 2009 merge Alpha class into Alphabet class [Gordon Gremme]
file VERSION Sun Jul 12 09:08:34 -0700 2009 version bump [Gordon Gremme]
directory doc/ Loading commit data...
directory gtdata/
directory gtpython/ Tue Nov 17 05:51:14 -0800 2009 gtruby, gtpython: adjust custom track title pas... [satta]
directory gtruby/ Wed Nov 18 07:27:26 -0800 2009 gtruby: fix seqid check [satta]
directory gtscripts/ Wed Mar 11 04:41:03 -0700 2009 remove obsolete extractor code not necessary a... [Gordon Gremme]
directory scripts/ Wed Oct 14 07:44:49 -0700 2009 Verified option -r for all testfiles. [Stefan Kurtz]
directory src/
directory testdata/
directory testsuite/ Sun Nov 15 15:26:52 -0800 2009 gtruby: add testcases for Custom{Stream,Visitor... [satta]
directory www/
README
This directory contains the source code for GenomeTools (gt).

Copyright (c) 2003-2009 Gordon Gremme, Stefan Kurtz, and CONTRIBUTORS
Copyright (c) 2003-2009 Center for Bioinformatics, University of Hamburg
See LICENSE file or http://genometools.org/license.html for license details.

The GenomeTools genome analysis system is a collection of bioinformatics tools
(in the realm of genome informatics) combined into a single binary named ``gt''.
It is based on a C library named ``libgenometools''.

doc/                   some documentation
gtdata/                data needed by gt (during runtime)
gtruby/                contains GenomeTools Ruby bindings (-> gtruby/README)
gtpython/              contains GenomeTools Python bindings (-> gtpython/README)
gtscripts/             some GenomeTools scripts (can be executed with gt)
scripts/               scripts used for development
src/                   the C source code for gt itself and the runtime
src/annotationsketch/  the C source code for AnnotationSketch
src/core/              the C source code for the ``core'' part
src/examples/          the C source code for some examples
src/extended/          the C source code for the ``extended'' part
src/external/          all C source code from external sources
src/gtlua/             the C source code for the ``gtlua'' bindings
src/ltr/               the C source code for the ``ltr'' part
src/match/             the C source code for the ``match'' part
src/mgth/              the C source code for the ``mgth'' part
src/tools/             the C source code for all tools
testdata/              the test data necessary for the test suite
testsuite/             the test suite
www/                   the web site

See INSTALL file for installation guidelines.