gilleain (gilleain torrance)

Add symbol strings (atom types) to edge strings

Canonical testing by creating edge strings

Two approaches to canonical checking

A Molecule Factory for making test molecule graphs

Assign permuted graphs to different automorphic sets

Permutation image - ANOTHER minor change

Permutation image - minor change

Permutation image

Some more tests (which don't pass)

4-cycle minimal test

Test that only one of all the permutations of a molecule is canonical

Cleanup and speedup of the canonical test method

fixed the canonical labelling

Removing the plain AbstractVertexSignature class

Some doc comments

A SymmetryClass class for grouping signature strings together with their vertex indices

Permute properly, and test for permutations

Permutation code

Another fix

Fix to test that was using the wrong starting color

Fixed the test that I broke

Hacks to get tests to pass, and mainfest file:

Color the display of colored trees

Builder for chemistry implementation, and test

Creating graphs from colored trees from signature strings

Some cleanup to the canonical code

Split abstract signature into two classes

Added junit dependancy and jar packaging to pom

Fixed the mess, I hope

Deletion part of move

Merge branch 'master' of git@github.com:gilleain/signatures

DAG visiting and started canonical labelling

Forgot to commit the data example

Merge branch 'master' of git@github.com:gilleain/signatures

Fixed sorting of children when printing, an created a test for this