gtex-estrs-paper

Code and analysis for genome-wide analysis of eSTRs in the GTEx cohort

Folders contain the following:

• figures: Jupyter notebooks for generating figures
• str-regression: scripts for eSTR regression analysis (on AWS)
• snp-regression: scripts for eSNP regression analysis (on AWS)
• anova: scripts for running eSTR+eSNP ANOVA
• caviar: scripts for running eSTR+eSNP CAVIAR
• master: scripts for collecting all eSTR summary statistics
• mashr: scripts for performing mashR analysis
• homer-plots: scripts for generating ChIP-seq histograms
• gwas: scripts for overlapping eSTRs with GWAS hits