harijay / protein-crystallization-gridmaker

A module of python classes that create 96 well crystallization screen dispense lists for the Formulatrix liquid handling robot

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protein-crystallization-gridmaker / example2.py
100644 44 lines (31 sloc) 1.307 kb
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#!/usr/bin/env python
# encoding: utf-8
"""
example2.py
 
Created by Hariharan Jayaram on 2009-01-28.
Copyright (c) 2009 __MyCompanyName__. All rights reserved.
"""
 
 
import masterplate
import plate
import component
 
def main():
# Create the plate in this case each well will have 2000 ml
mp = masterplate.Masterplate(2000)
p = plate.Plate("A1","H12",mp)
 
# Define a component with concentration units that you keep constant for this component. i.e
# if you use percent then you remember to use percent everytime you want to dispense this component
c = component.Component("CaAc2",2000,100000)
 
# Gradient along X dispensed a gradient of component along x ( i.e along number axis on 96 well plate)
p.gradient_along_x(c,0,200)
 
peg400 = component.Component("peg400",50,100000)
# Gradient along Y dispensed a gradient of component along y ( i.e along alphabet axis)
p.gradient_along_y(peg400,22,30)
 
 
buff = component.Component("ph8.0", 1000,100000)
# Constant for the well uses constant_concentration
p.constant_concentration(buff,100)
 
Water = component.Component("100.00% Water",100,100000)
p.fill_water(Water)
# The makefileforformulatrix method of masterplate.Masterplate Class writes the dispense list
mp.makefileforformulatrix("example2.dl.txt")
 
if __name__ == '__main__':
main()