Coverage track autoscaling not working intially when using port

[marc-sturm]

Hi Jim,

I found another bug in IGV 2.9.2 on Windows10:
The autoscaling of the coverage track does not work correctly when sending commands via the port.
It works correctly if I load the file manually and jump to the position.

If I start a new session, load a BAM and jump to a heterozygous SNV via the port, it shows this:

Autoscaling is enabled for the coverage track.
The depth at the position is however not 60.

When I zoom out, it correctly autoscales the coverage track then:

Best,
Marc

[jrobinso]

noted

[rsettlage]

This behavior is similar for batch mode. Is there a work around? I am trying to script creating png's around variations. I am using version 2.9.4 on Mac and Linux.

[jrobinso]

@rsettlage I don't know if there is a workaround or not but this will be fixed in the next point release.

[jrobinso]

This is fixed and will be released around the end of the month. Meanwhile it will be available in the snapshot build