jandot / bio-graphics
watch download tarball
public
Forks5Right
Watchers17Right
Description: Bio::Graphics is a ruby library for visualizing annotations on chromosomes
Homepage: http://bio-graphics.rubyforge.org
Clone URL: git://github.com/jandot/bio-graphics.git 
added Panel.pixel_position for determining pixel offsets from a panel
dgtized (author)
Tue Jul 22 14:55:44 -0700 2008
jandot (committer)
Thu Aug 21 05:46:55 -0700 2008
commit  9c67fa2ddb58dd9fc298b2ca9185752149a2e6dd
tree    db4f5bbc06b5d6f3e15a79ab21cc99a34ad68575
parent  b08f5639be09a25b7eae9ca322ce654c7fe87c29
bio-graphics / images / terms.svg
100644 181 lines (180 sloc) 7.436 kb
raw blame history 
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181

<?xml version="1.0" encoding="UTF-8" standalone="no"?>
<!-- Created with Inkscape (http://www.inkscape.org/) -->
<svg
   xmlns:dc="http://purl.org/dc/elements/1.1/"
   xmlns:cc="http://web.resource.org/cc/"
   xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
   xmlns:svg="http://www.w3.org/2000/svg"
   xmlns="http://www.w3.org/2000/svg"
   xmlns:xlink="http://www.w3.org/1999/xlink"
   xmlns:sodipodi="http://sodipodi.sourceforge.net/DTD/sodipodi-0.dtd"
   xmlns:inkscape="http://www.inkscape.org/namespaces/inkscape"
   id="svg2288"
   sodipodi:version="0.32"
   inkscape:version="0.45.1"
   width="800"
   height="365"
   version="1.0"
   sodipodi:docbase="/home/aertsj/LocalDocuments/bio-graphics/trunk/images"
   sodipodi:docname="terms.svg"
   inkscape:output_extension="org.inkscape.output.svg.inkscape"
   inkscape:export-filename="/home/aertsj/LocalDocuments/bio-graphics/trunk/images/terms.png"
   inkscape:export-xdpi="90"
   inkscape:export-ydpi="90">
  <metadata
     id="metadata2293">
    <rdf:RDF>
      <cc:Work
         rdf:about="">
        <dc:format>image/svg+xml</dc:format>
        <dc:type
           rdf:resource="http://purl.org/dc/dcmitype/StillImage" />
      </cc:Work>
    </rdf:RDF>
  </metadata>
  <defs
     id="defs2291">
    <marker
       inkscape:stockid="Arrow1Lend"
       orient="auto"
       refY="0.0"
       refX="0.0"
       id="Arrow1Lend"
       style="overflow:visible;">
      <path
         id="path6115"
         d="M 0.0,0.0 L 5.0,-5.0 L -12.5,0.0 L 5.0,5.0 L 0.0,0.0 z "
         style="fill-rule:evenodd;stroke:#000000;stroke-width:1.0pt;marker-start:none;"
         transform="scale(0.8) rotate(180) translate(12.5,0)" />
    </marker>
  </defs>
  <sodipodi:namedview
     inkscape:window-height="750"
     inkscape:window-width="1280"
     inkscape:pageshadow="2"
     inkscape:pageopacity="0.0"
     guidetolerance="10.0"
     gridtolerance="10.0"
     objecttolerance="10.0"
     borderopacity="1.0"
     bordercolor="#666666"
     pagecolor="#ffffff"
     id="base"
     inkscape:zoom="1.02"
     inkscape:cx="411.76471"
     inkscape:cy="175.14706"
     inkscape:window-x="0"
     inkscape:window-y="0"
     inkscape:current-layer="svg2288" />
  <image
     xlink:href="example_labels.png"
     sodipodi:absref="/home/aertsj/LocalDocuments/bio-graphics/trunk/images/example_labels.png"
     width="800"
     height="365"
     id="image2295"
     x="0"
     y="0" />
  <rect
     style="fill:#d02e16;fill-opacity:0.46448089;stroke:none;stroke-linejoin:round;stroke-opacity:1"
     id="rect6307"
     width="815.92218"
     height="35.733818"
     x="-6.9806962"
     y="-1.8865167" />
  <text
     xml:space="preserve"
     style="font-size:12px;font-style:normal;font-variant:normal;font-weight:bold;font-stretch:normal;text-align:start;line-height:125%;writing-mode:lr-tb;text-anchor:start;fill:#000000;fill-opacity:1;stroke:none;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;stroke-opacity:1;font-family:Bitstream Vera Sans"
     x="264.2088"
     y="-30.312824"
     id="text8253"
     sodipodi:linespacing="125%"><tspan
       sodipodi:role="line"
       id="tspan8255"
       x="264.2088"
       y="-30.312824">Ruler</tspan></text>
  <path
     style="fill:none;fill-rule:evenodd;stroke:#000000;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;marker-end:url(#Arrow1Lend);stroke-opacity:1"
     d="M 305.8403,-31.908288 L 352.74094,-3.6190077"
     id="path8257"
     sodipodi:nodetypes="cc" />
  <text
     xml:space="preserve"
     style="font-size:12px;font-style:normal;font-weight:bold;fill:#000000;fill-opacity:1;stroke:none;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;stroke-opacity:1;font-family:Bitstream Vera Sans;font-stretch:normal;font-variant:normal;text-anchor:start;text-align:start;writing-mode:lr;line-height:125%"
     x="732.52533"
     y="240.59735"
     id="text5134"
     sodipodi:linespacing="125%"><tspan
       sodipodi:role="line"
       id="tspan5136"
       x="732.52533"
       y="240.59735">Track</tspan></text>
  <path
     sodipodi:type="arc"
     style="fill:#0209fb;fill-opacity:0.55191255;stroke:none;stroke-linejoin:round;stroke-opacity:1"
     id="path7278"
     sodipodi:cx="442.57822"
     sodipodi:cy="272.11029"
     sodipodi:rx="10.794591"
     sodipodi:ry="10.422363"
     d="M 453.37281 272.11029 A 10.794591 10.422363 0 1 1  431.78363,272.11029 A 10.794591 10.422363 0 1 1  453.37281 272.11029 z"
     transform="translate(-91.164966,-131.63624)" />
  <text
     xml:space="preserve"
     style="font-size:12px;font-style:normal;font-weight:bold;fill:#000000;fill-opacity:1;stroke:none;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;stroke-opacity:1;font-family:Bitstream Vera Sans;font-stretch:normal;font-variant:normal;text-anchor:start;text-align:start;writing-mode:lr;line-height:125%"
     x="447.54382"
     y="131.31154"
     id="text8249"
     sodipodi:linespacing="125%"><tspan
       sodipodi:role="line"
       id="tspan8251"
       x="447.54382"
       y="131.31154">Feature</tspan></text>
  <path
     style="fill:none;fill-rule:evenodd;stroke:#000000;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;marker-end:url(#Arrow1Lend);stroke-opacity:1"
     d="M 440.69642,131.87618 L 363.85942,137.86847"
     id="path8259"
     sodipodi:nodetypes="cc" />
  <path
     sodipodi:type="arc"
     style="fill:#0209fb;fill-opacity:0.55191255;stroke:none;stroke-linejoin:round;stroke-opacity:1"
     id="path8261"
     sodipodi:cx="442.57822"
     sodipodi:cy="272.11029"
     sodipodi:rx="10.794591"
     sodipodi:ry="10.422363"
     d="M 453.37281 272.11029 A 10.794591 10.422363 0 1 1  431.78363,272.11029 A 10.794591 10.422363 0 1 1  453.37281 272.11029 z"
     transform="matrix(4.2413793,0,0,1,-1493.3289,-185.20032)" />
  <path
     style="fill:none;fill-rule:evenodd;stroke:#000000;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;marker-end:url(#Arrow1Lend);stroke-opacity:1"
     d="M 442.42126,117.66854 L 411.77262,95.298269"
     id="path8263"
     sodipodi:nodetypes="cc" />
  <rect
     style="fill:#6ae432;fill-opacity:0.46448089;stroke:none;stroke-width:1.40473521;stroke-linejoin:round;stroke-opacity:1"
     id="rect3194"
     width="805.83954"
     height="88.185356"
     x="-7.8217263"
     y="261.10339" />
  <path
     style="fill:none;fill-rule:evenodd;stroke:#000000;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;marker-end:url(#Arrow1Lend);stroke-opacity:1"
     d="M 727.89591,239.70636 L 668.34402,270.04133"
     id="path5138"
     sodipodi:nodetypes="cc" />
  <text
     xml:space="preserve"
     style="font-size:12px;font-style:normal;font-weight:bold;fill:#000000;fill-opacity:1;stroke:none;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;stroke-opacity:1;font-family:Bitstream Vera Sans;font-stretch:normal;font-variant:normal;text-anchor:start;text-align:start;writing-mode:lr;line-height:125%"
     x="522.54974"
     y="220.45403"
     id="text2181"
     sodipodi:linespacing="125%"><tspan
       sodipodi:role="line"
       id="tspan2183"
       x="522.54974"
       y="220.45403">Label</tspan></text>
  <path
     style="fill:none;fill-rule:evenodd;stroke:#000000;stroke-width:1px;stroke-linecap:butt;stroke-linejoin:miter;marker-end:url(#Arrow1Lend);stroke-opacity:1"
     d="M 519.97202,211.59722 L 468.26327,187.03023"
     id="path2185"
     sodipodi:nodetypes="cc" />
</svg>