@@ -141,10 +141,13 @@ class Bio::Graphics::SubFeature else @glyph = @feature.glyph end - - @colour = @colour.nil? ? @feature.colour : @colour - @colour = @colour.respond_to?(:call) ? @colour.call(self) : @colour + if @feature.colour.class == Hash + @colour = @feature.colour[@feature_object.feature] + else + @colour = @colour.nil? ? @feature.colour : @colour + end + @colour = @colour.respond_to?(:call) ? @colour.call(self) : @colour # We have to check if we want to change the glyph type from directed to # undirected lib/bio/graphics/subfeature.rb @@ -50,7 +50,8 @@ class Bio::Graphics::Track # As far as I know, I can't do this in the glyph file for transcript, so we # have to do it here instead. if @glyph == :transcript - @glyph = { 'utr5' => :box, 'utr3' => :directed_box, 'cds' => :spliced } + @glyph = { 'utr5' => :spliced, 'utr3' => :spliced, 'cds' => :directed_spliced } + @colour = { 'utr5' => @colour.map {|x| x * 0.75}, 'utr3' => @colour.map {|x| x * 0.75}, 'cds' => @colour } end @features = Array.new lib/bio/graphics/track.rb 3c53473ef49599fc948aa5f3c8ec8cd71a0aef31 Charles Comstock dgtized@gmail.com http://github.com/jandot/bio-graphics/commit/b08f5639be09a25b7eae9ca322ce654c7fe87c29 b08f5639be09a25b7eae9ca322ce654c7fe87c29 2008-08-21T05:45:32-07:00 2008-07-22T14:13:38-07:00 added spliced support for transcript glyph 8e971e104ef12d0e0e44af9d3e66eeca050eeae0 Jan Aerts jan.aerts@gmail.com