5a522c688729000d21b7fffae919d6888a8a00b6 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/74b628de1d968fc5013b150df4675d61e8df94de 74b628de1d968fc5013b150df4675d61e8df94de

2009-07-24T06:34:11-07:00

Fixed bug 6039bfe0b5454c4044d1b74e490a3ac8af158ed2 Jan Aerts jan.aerts@gmail.com a22141a33da09969a6c0f28e9fbadcc42b2e72ae Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/5a522c688729000d21b7fffae919d6888a8a00b6 5a522c688729000d21b7fffae919d6888a8a00b6

2009-07-20T06:52:56-07:00

Genome size calculated based on meta_data.tsv instead of hard-coded. Should enable other species. 9a7408a8f9b797e23287b5e2e546d60c309a8c12 Jan Aerts jan.aerts@gmail.com df7b7755030861efc3319239f9ad0295579c3734 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/a22141a33da09969a6c0f28e9fbadcc42b2e72ae a22141a33da09969a6c0f28e9fbadcc42b2e72ae

2009-07-13T02:46:43-07:00

Catching case when we can't get the sequence because Ensembl is down b31c18711aed80129dc68fd9313851d405997725 Jan Aerts jan.aerts@gmail.com dc8da6c4fbc08fbb6dc9dde697f240d14742c47f Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/df7b7755030861efc3319239f9ad0295579c3734 df7b7755030861efc3319239f9ad0295579c3734

2009-07-13T02:40:44-07:00

One of the 'end's got missing. Added it again. 2c0bcfb5cf9892e7f45736f749c4794a7d0d2491 Jan Aerts jan.aerts@gmail.com 9a723a5320f30505bc37ba4a40c1cc998ba4c2eb Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/dc8da6c4fbc08fbb6dc9dde697f240d14742c47f dc8da6c4fbc08fbb6dc9dde697f240d14742c47f

2009-07-13T02:37:47-07:00

Pan slice contents by dragging mouse instead of using arrow keys. Added proof-of-concept for right-mouse button menu. 71c5d025594369859f3110f915828fb3deb21994 Jan Aerts jan.aerts@gmail.com 32e010af6a22644bf60dbf346ba4b61e4808a8d6 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/9a723a5320f30505bc37ba4a40c1cc998ba4c2eb 9a723a5320f30505bc37ba4a40c1cc998ba4c2eb

2009-07-09T05:44:31-07:00

Removed unused lines from config file c7fac4f07d251d3a8032cae82fdb0e14ec65de65 Jan Aerts jan.aerts@gmail.com 51c7bbf61d5b5f7f7e0a7d2d9fb925165b0df023 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/32e010af6a22644bf60dbf346ba4b61e4808a8d6 32e010af6a22644bf60dbf346ba4b61e4808a8d6

2009-07-09T05:40:50-07:00

Recreated new pARP applications 2e729854faae2b7cb9f41376ad7c702ce94b0c57 Jan Aerts jan.aerts@gmail.com 96e8cd345e51cc060b226e594cad5c3b2ff94e04 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/51c7bbf61d5b5f7f7e0a7d2d9fb925165b0df023 51c7bbf61d5b5f7f7e0a7d2d9fb925165b0df023

2009-07-09T05:38:25-07:00

Changed data d4840c914efbd7453c2f341ee21aa7f7616961ec Jan Aerts jan.aerts@gmail.com 19e3b01e1a07267a4caba19a969afa94938abbc0 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/96e8cd345e51cc060b226e594cad5c3b2ff94e04 96e8cd345e51cc060b226e594cad5c3b2ff94e04

2009-07-09T03:15:33-07:00

Removed Locus#apply_lenses f0836ff87f63395700de9aff67578a8e9c70bb59 Jan Aerts jan.aerts@gmail.com edbb6b21e9e6a14641859bf30de1c2b7dcdfb11f Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/19e3b01e1a07267a4caba19a969afa94938abbc0 19e3b01e1a07267a4caba19a969afa94938abbc0

2009-07-09T03:12:49-07:00

Removed lib/display.rb which we don't use anymore 7541860a0fabd8df5f9a5ab64918eae705aa19a3 Jan Aerts jan.aerts@gmail.com b033e71179bb63e6dce7883b432a5955018f2083 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/edbb6b21e9e6a14641859bf30de1c2b7dcdfb11f edbb6b21e9e6a14641859bf30de1c2b7dcdfb11f

2009-07-09T02:31:49-07:00

Added panning hints to display c03702d1d95a8b59a7e136963f72fa9108096621 Jan Aerts jan.aerts@gmail.com 55d3ac61bde8dfa914ec08b6810a1bfd5b76d461 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/b033e71179bb63e6dce7883b432a5955018f2083 b033e71179bb63e6dce7883b432a5955018f2083

2009-07-08T09:08:57-07:00

Applications for Mac, Windows and linux d2ace0cd1d31ff39cf48f2bdc3fe2a348421f2bc Jan Aerts jan.aerts@gmail.com c77d12ad12028820bc369c304d4254a2bfe1dfd2 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/55d3ac61bde8dfa914ec08b6810a1bfd5b76d461 55d3ac61bde8dfa914ec08b6810a1bfd5b76d461

2009-07-08T06:27:59-07:00

Slice#add now creates new slice with resolution*100 instead of length_bp of 5_000_000 87c370fa46a94b97137fc14a50aeabef8c8c855a Jan Aerts jan.aerts@gmail.com 852f7d8c364c7fd8705d0f6188536856766289fc Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/c77d12ad12028820bc369c304d4254a2bfe1dfd2 c77d12ad12028820bc369c304d4254a2bfe1dfd2

2009-07-08T06:20:37-07:00

Cleanup of data directory 9d314debee2a0ea5760210f6b13cb91bfe00489e Jan Aerts jan.aerts@gmail.com 46e2047a3b2d52eeb291e90bfa75d2635d6e8571 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/852f7d8c364c7fd8705d0f6188536856766289fc 852f7d8c364c7fd8705d0f6188536856766289fc

2009-07-08T03:41:54-07:00

Changed colour of G from black to yellow 19adb9ebc9f7dc739b7fe03ad9c36225df462c9e Jan Aerts jan.aerts@gmail.com b3add906e3250dd4b5775f41fe4fff2bb0ffcc65 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/46e2047a3b2d52eeb291e90bfa75d2635d6e8571 46e2047a3b2d52eeb291e90bfa75d2635d6e8571

2009-07-08T03:41:40-07:00

Moved config.yml to data-directory. Necessary for export of pARP. f0992bbbf70b3767bd7d79318a6ea1a6ba066cf2 Jan Aerts jan.aerts@gmail.com a054bf7709d1c70c456ba7e8dcd0ece1e7795064 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/b3add906e3250dd4b5775f41fe4fff2bb0ffcc65 b3add906e3250dd4b5775f41fe4fff2bb0ffcc65

2009-07-08T02:18:46-07:00

Zoomed in slices now show the sequence 80e31a910d86e89d3c38d6da305ef0aa3e63c954 Jan Aerts jan.aerts@gmail.com 0b8a0354881e57bf858334e7daaa2b8b55ede6d0 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/a054bf7709d1c70c456ba7e8dcd0ece1e7795064 a054bf7709d1c70c456ba7e8dcd0ece1e7795064

2009-07-07T12:04:04-07:00

Slice information on information panel visually linked to zoom scale 057c242b465a8e7876fe47b04a3a96527b0b150e Jan Aerts jan.aerts@gmail.com 4a51ded2fa1c0430878efa2816a160ca8d297d05 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/0b8a0354881e57bf858334e7daaa2b8b55ede6d0 0b8a0354881e57bf858334e7daaa2b8b55ede6d0

2009-07-07T06:01:14-07:00

Added vendor directory 542f08db9cd4bb952ca200adb4cae1f942524bfb Jan Aerts jan.aerts@gmail.com a2c8e46e668ea597800c4eb1345c5b9176aeb17e Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/4a51ded2fa1c0430878efa2816a160ca8d297d05 4a51ded2fa1c0430878efa2816a160ca8d297d05

2009-07-07T06:00:34-07:00

Removed leftover file extensions.rb (replaced with _extensions.rb) 9be10220cc49d577afcd9aa8a98b6a6ae3985ee5 Jan Aerts jan.aerts@gmail.com 13a3859618d15f0e848e81338a28624e5f1bb18f Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/a2c8e46e668ea597800c4eb1345c5b9176aeb17e a2c8e46e668ea597800c4eb1345c5b9176aeb17e

2009-07-07T05:59:20-07:00

Tweaked so that pARP runs with 'rp5 run' instead of only jruby. Will need my own fork of ruby-processing, though. Run as 'jruby my_fork/bin/rp5 run ./parp.rb' a7e05cb422100f4274fdc074ae0293e26af45a3f Jan Aerts jan.aerts@gmail.com 990be326d471b9e9952bbc2af947c6c58276f986 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/13a3859618d15f0e848e81338a28624e5f1bb18f 13a3859618d15f0e848e81338a28624e5f1bb18f

2009-07-07T03:29:48-07:00

Added slice labels to information panel bb2bf3a0be55863c63aba0385a2bc8be9f2f1d3c Jan Aerts jan.aerts@gmail.com c8ade08f667e0030b8823cfe0feb52b2898c58b2 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/990be326d471b9e9952bbc2af947c6c58276f986 990be326d471b9e9952bbc2af947c6c58276f986

2009-07-07T02:00:37-07:00

Zooming scale now uses saturation and goes from white-red instead of black-red 90152e510eae8d7c65823318441a89a47f4c5cff Jan Aerts jan.aerts@gmail.com 11f8eb1f81456d51970f8416f6b22ab46a35ab8c Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/c8ade08f667e0030b8823cfe0feb52b2898c58b2 c8ade08f667e0030b8823cfe0feb52b2898c58b2

2009-07-06T09:22:27-07:00

Removed files/classes that we don't use any longer 54bfcf0f529ca2db66ba797cb3aa14c5716beafe Jan Aerts jan.aerts@gmail.com 699034dbe1e2ae2287bf5893f7fbea29b9e65a8a Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/11f8eb1f81456d51970f8416f6b22ab46a35ab8c 11f8eb1f81456d51970f8416f6b22ab46a35ab8c

2009-07-06T08:10:11-07:00

Added slice labels and draws colour scale for zoom level 477425da7b07172901668365e1803900485fd45c Jan Aerts jan.aerts@gmail.com 827381e376a8d5c63d0deffe93d5d51f9c284701 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/699034dbe1e2ae2287bf5893f7fbea29b9e65a8a 699034dbe1e2ae2287bf5893f7fbea29b9e65a8a

2009-07-06T05:33:13-07:00

Added data file with genes 535f6d19a847e71545df68a37039658d417f3bac Jan Aerts jan.aerts@gmail.com 57e2a5598162324076fa63052b6db892a2c9fdb0 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/827381e376a8d5c63d0deffe93d5d51f9c284701 827381e376a8d5c63d0deffe93d5d51f9c284701

2009-07-06T05:30:50-07:00

Trivial name change aedb36b7bf2931d5663d8b802ec65a6143a735a8 Jan Aerts jan.aerts@gmail.com d8f2f54950252b3be0904f21c2e0df30af41dbec Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/57e2a5598162324076fa63052b6db892a2c9fdb0 57e2a5598162324076fa63052b6db892a2c9fdb0

2009-07-06T05:24:15-07:00

Drawing blue circle following mouse when dragging slice boundaries 529a86809fa9485fec2808afe85fa193607ce438 Jan Aerts jan.aerts@gmail.com 65032282b84e3eb458a4271ca4c12b43a2b07ea1 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/d8f2f54950252b3be0904f21c2e0df30af41dbec d8f2f54950252b3be0904f21c2e0df30af41dbec

2009-07-06T05:21:06-07:00

Fixed bug in xy2pixel and pixel_under_mouse f335a9d7ef3c99bd6a3cf76fe6fd48f7d35515a1 Jan Aerts jan.aerts@gmail.com c4c63a722d02d0ef87249ca2789d426543042154 Jan Aerts jan.aerts@gmail.com http://github.com/jandot/parp/commit/65032282b84e3eb458a4271ca4c12b43a2b07ea1 65032282b84e3eb458a4271ca4c12b43a2b07ea1

2009-07-06T04:13:00-07:00

Slice pixel boundaries can now be dragged around fae56f17695d22b76aa418bc4fa4c74b976100db Jan Aerts jan.aerts@gmail.com