@@ -1,2 +1,39 @@ #!/usr/bin/ruby -system("irb -r irb/completion -r rubygems -r bio -r ensembl") \ No newline at end of file +require 'irb' +require 'ensembl' + +module IRB + def self.start_session(binding) + IRB.setup(nil) + + workspace = WorkSpace.new(binding) + + if @CONF[:SCRIPT] + irb = Irb.new(workspace, @CONF[:SCRIPT]) + else + irb = Irb.new(workspace) + end + + @CONF[:IRB_RC].call(irb.context) if @CONF[:IRB_RC] + @CONF[:MAIN_CONTEXT] = irb.context + + trap("SIGINT") do + irb.signal_handle + end + + catch(:IRB_EXIT) do + irb.eval_input + end + end +end + +include Ensembl::Core +if ARGV.length == 2 + species = ARGV.shift + release = ARGV.shift.to_i + DBConnection.connect(species,release) + + IRB.start_session(Kernel.binding) +else + raise "ERROR: Please provide snake_case species and Ensembl release number" +end bin/ensembl d639df88d29123740c83b53ff788fafdd76cf76a Jan Aerts jan.aerts@gmail.com http://github.com/jandot/ruby-ensembl-api/commit/4857f30abf0a6c1cfcb5e4001ee50d8346aae9ff 4857f30abf0a6c1cfcb5e4001ee50d8346aae9ff 2008-09-10T02:06:45-07:00 2008-09-10T02:06:45-07:00 The ensembl command now takes two arguments: species and release cc5a01601e7077bc851b653df1809222246a0d72 Jan Aerts jan.aerts@gmail.com