GitHub - jefferis/AnalysisSuiteBin: These are additional perl/shell scripts that are intended to support my AnalysisSuite package

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 92 Commits
README		README
TraceQualityControl.pl		TraceQualityControl.pl
ailinkedfiles.pl		ailinkedfiles.pl
asctomesh.pl		asctomesh.pl
bioradinfo.pl		bioradinfo.pl
bioradresample.pl		bioradresample.pl
buildapp.py		buildapp.py
callaverage.pl		callaverage.pl
callmunger.pl		callmunger.pl
callmunger.sh		callmunger.sh
callmungereasygui.py		callmungereasygui.py
findSubTrees.pl		findSubTrees.pl
goodbrains.sh		goodbrains.sh
htmltotxt.pl		htmltotxt.pl
loadAllFile.scro		loadAllFile.scro
makefilelists.pl		makefilelists.pl
masterObject		masterObject
meshtoasc.pl		meshtoasc.pl
munger.pl		munger.pl
parse-excel.pl		parse-excel.pl
regtomesh.pl		regtomesh.pl
rsyncVesalius.sh		rsyncVesalius.sh
transformTraces.sh		transformTraces.sh
transformasc.pl		transformasc.pl
xlsfilter.pl		xlsfilter.pl
xlstotxt.pl		xlstotxt.pl

Repository files navigation

This package provides some additional perl/shell scripts that can be used either in conjunction with my neuroanatomy AnalysisSuite or as a standalone.

The most interesting scripts are probably:

  * munger.pl used to control image registration from the command line.  See http://flybrain.mrc-lmb.cam.ac.uk/dokuwiki/doku.php?id=warping_manual:custom_command_lines_for_munger.pl
  * callmungereasygui.py - a very simple cross-platform python GUI to run munger.pl
  * bioradinfo.pl - information about biorad PIC format files
  * ailinkedfiles.pl - used to manage linked files in Adobe Illustrator documents

See also:

	http://flybrain.stanford.edu/utilscripts
	http://github.com/jefferis/AnalysisSuiteBin