{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":251419423,"defaultBranch":"master","name":"kage","ownerLogin":"kage-genotyper","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-03-30T20:21:41.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/123493998?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1703332981.0","currentOid":""},"activityList":{"items":[{"before":"9c0355037aec00d92aaf549950cb6dbb37e82569","after":"7ec2fcbeb516fbc4c3b5649b1fb37eaa60ea7266","ref":"refs/heads/master","pushedAt":"2024-02-09T15:47:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Readme fix","shortMessageHtmlLink":"Readme fix"}},{"before":"29f84756bd2b6bb730cb01b5defe1f91c645fc79","after":"9c0355037aec00d92aaf549950cb6dbb37e82569","ref":"refs/heads/master","pushedAt":"2024-02-09T14:32:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"kmer mapper version update","shortMessageHtmlLink":"kmer mapper version update"}},{"before":"f4afcd536f69be8bd43c96c8897602f041e826e4","after":"29f84756bd2b6bb730cb01b5defe1f91c645fc79","ref":"refs/heads/master","pushedAt":"2024-02-04T12:53:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"PYthon version support in readme","shortMessageHtmlLink":"PYthon version support in readme"}},{"before":"920d320dca054a0b75b7922f2f30cf52d5058088","after":"f4afcd536f69be8bd43c96c8897602f041e826e4","ref":"refs/heads/master","pushedAt":"2024-02-04T11:20:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"cucounter installation desc","shortMessageHtmlLink":"cucounter installation desc"}},{"before":"65665d7716d29420a0756570d5fc6194816eaf11","after":"920d320dca054a0b75b7922f2f30cf52d5058088","ref":"refs/heads/master","pushedAt":"2024-02-01T14:41:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Fixes for GPU support","shortMessageHtmlLink":"Fixes for GPU support"}},{"before":"1fc407b273d74ea5e354ea7b259e404210324000","after":"65665d7716d29420a0756570d5fc6194816eaf11","ref":"refs/heads/master","pushedAt":"2024-01-10T14:27:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Lower chunk size when indexing to lower memory, div cleanup, readme fix","shortMessageHtmlLink":"Lower chunk size when indexing to lower memory, div cleanup, readme fix"}},{"before":"05d8d6f7049a52f6a663786c8a7ea5df05285857","after":"1fc407b273d74ea5e354ea7b259e404210324000","ref":"refs/heads/master","pushedAt":"2024-01-02T11:30:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"fix","shortMessageHtmlLink":"fix"}},{"before":"cb5190f521337f453f10e5cdf3a6cf29f1a2f5f0","after":"05d8d6f7049a52f6a663786c8a7ea5df05285857","ref":"refs/heads/master","pushedAt":"2024-01-02T11:19:01.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Dealing with Ns in variants","shortMessageHtmlLink":"Dealing with Ns in variants"}},{"before":"19f424c50ce12ccc1552e0130392fa161f0a6ba3","after":"cb5190f521337f453f10e5cdf3a6cf29f1a2f5f0","ref":"refs/heads/master","pushedAt":"2023-12-31T11:08:05.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Command line tool for converting purebread vcf","shortMessageHtmlLink":"Command line tool for converting purebread vcf"}},{"before":"2354b126ecd039412df0d0623b6d80f7cda930e6","after":"19f424c50ce12ccc1552e0130392fa161f0a6ba3","ref":"refs/heads/master","pushedAt":"2023-12-19T12:32:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"readme update","shortMessageHtmlLink":"readme update"}},{"before":"606252618ad2cfbe846219f14cc0aac2b3b1caa3","after":"2354b126ecd039412df0d0623b6d80f7cda930e6","ref":"refs/heads/master","pushedAt":"2023-12-18T12:09:35.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"version bump","shortMessageHtmlLink":"version bump"}},{"before":"285c347a67e6b5bb4ff874e5d12fdeb645dbd694","after":"606252618ad2cfbe846219f14cc0aac2b3b1caa3","ref":"refs/heads/master","pushedAt":"2023-12-13T12:53:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Option to only use imputation for SVs","shortMessageHtmlLink":"Option to only use imputation for SVs"}},{"before":"abb7c36c8c1aa57398ee1ecc70617378e4c9cd2f","after":"285c347a67e6b5bb4ff874e5d12fdeb645dbd694","ref":"refs/heads/master","pushedAt":"2023-12-12T20:26:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Fixed issue when reference does not have same order of chromosome as vcf","shortMessageHtmlLink":"Fixed issue when reference does not have same order of chromosome as vcf"}},{"before":"dd655d10e018fa29afc8b5dbda23427d962a28a0","after":"abb7c36c8c1aa57398ee1ecc70617378e4c9cd2f","ref":"refs/heads/master","pushedAt":"2023-12-12T08:46:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Not downscaling coverage when not using glimpse","shortMessageHtmlLink":"Not downscaling coverage when not using glimpse"}},{"before":"1688cfd120f2246f2fcb36cefac02eb04ffe90d6","after":"dd655d10e018fa29afc8b5dbda23427d962a28a0","ref":"refs/heads/master","pushedAt":"2023-12-12T08:29:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Div minor fixes","shortMessageHtmlLink":"Div minor fixes"}},{"before":"c3e6cb4e4ad47e9516dec4762723fdfc91c194ae","after":"1688cfd120f2246f2fcb36cefac02eb04ffe90d6","ref":"refs/heads/master","pushedAt":"2023-12-08T11:48:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Bugfix when no large variants","shortMessageHtmlLink":"Bugfix when no large variants"}},{"before":"398a78191371b390bc7451be0510058cd2c56d1e","after":"c3e6cb4e4ad47e9516dec4762723fdfc91c194ae","ref":"refs/heads/master","pushedAt":"2023-12-08T10:27:26.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"versionbump","shortMessageHtmlLink":"versionbump"}},{"before":"992aa028ad925afc036ca637175ec8c9d432e125","after":"398a78191371b390bc7451be0510058cd2c56d1e","ref":"refs/heads/master","pushedAt":"2023-12-07T10:47:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Naive genotyper for baseline","shortMessageHtmlLink":"Naive genotyper for baseline"}},{"before":"100607c90cbe81f37c34b3da8dba8c4b62fa6e8b","after":"992aa028ad925afc036ca637175ec8c9d432e125","ref":"refs/heads/master","pushedAt":"2023-12-07T09:24:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Versionbump","shortMessageHtmlLink":"Versionbump"}},{"before":"77bbb1c0f90aaead55c66f3e7782ecb11f28d1a2","after":"100607c90cbe81f37c34b3da8dba8c4b62fa6e8b","ref":"refs/heads/master","pushedAt":"2023-12-07T09:14:46.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Testfix","shortMessageHtmlLink":"Testfix"}},{"before":"35d8bdc4142ac19c01ff1da06ea89263f62f4e84","after":"77bbb1c0f90aaead55c66f3e7782ecb11f28d1a2","ref":"refs/heads/master","pushedAt":"2023-12-07T09:00:16.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Bcftools","shortMessageHtmlLink":"Bcftools"}},{"before":"dff634bf792eeb980a104590f5daf23960e8526c","after":"35d8bdc4142ac19c01ff1da06ea89263f62f4e84","ref":"refs/heads/master","pushedAt":"2023-12-07T08:46:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Missing files","shortMessageHtmlLink":"Missing files"}},{"before":"b8b8da0524121223746d59d233d92d6ef702ad7e","after":"dff634bf792eeb980a104590f5daf23960e8526c","ref":"refs/heads/master","pushedAt":"2023-12-06T21:36:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"MIssing file","shortMessageHtmlLink":"MIssing file"}},{"before":"dbf85d7b280e8000efa3f21753bca43bbc42bb56","after":"b8b8da0524121223746d59d233d92d6ef702ad7e","ref":"refs/heads/master","pushedAt":"2023-12-06T21:19:38.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Working with latest bionumpy","shortMessageHtmlLink":"Working with latest bionumpy"}},{"before":"c45c9d3dbc7077a0af42537694b2753e3ca4d6d3","after":"dbf85d7b280e8000efa3f21753bca43bbc42bb56","ref":"refs/heads/master","pushedAt":"2023-12-06T14:04:18.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Variuous fixes and memory cleanup","shortMessageHtmlLink":"Variuous fixes and memory cleanup"}},{"before":"b87f89d3b66d7f365aa3ad617351e194a01b50b0","after":"c45c9d3dbc7077a0af42537694b2753e3ca4d6d3","ref":"refs/heads/master","pushedAt":"2023-11-24T09:33:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"testfix","shortMessageHtmlLink":"testfix"}},{"before":"05bdf5f2fe855980ee73bf8f7547e2c38e5f6c66","after":"b87f89d3b66d7f365aa3ad617351e194a01b50b0","ref":"refs/heads/master","pushedAt":"2023-11-24T09:28:23.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Variant fixes","shortMessageHtmlLink":"Variant fixes"}},{"before":"68c78645bca09c43af1bf2f907a3ca6a564759b4","after":"05bdf5f2fe855980ee73bf8f7547e2c38e5f6c66","ref":"refs/heads/master","pushedAt":"2023-11-20T13:01:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Missing init file","shortMessageHtmlLink":"Missing init file"}},{"before":"835cc7485b4be459f22a7d18374a15a300ade51b","after":"68c78645bca09c43af1bf2f907a3ca6a564759b4","ref":"refs/heads/master","pushedAt":"2023-11-20T11:54:49.000Z","pushType":"push","commitsCount":129,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Minor fixes","shortMessageHtmlLink":"Minor fixes"}},{"before":"73c3dd25b1b689fa369fe52d317de5956596b5fa","after":"68c78645bca09c43af1bf2f907a3ca6a564759b4","ref":"refs/heads/dev","pushedAt":"2023-11-20T11:51:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"ivargr","name":null,"path":"/ivargr","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/13506651?s=80&v=4"},"commit":{"message":"Minor fixes","shortMessageHtmlLink":"Minor fixes"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD9qh9QAA","startCursor":null,"endCursor":null}},"title":"Activity ยท kage-genotyper/kage"}