This is an R package to study the centroids associated with a hierarchical clustering. To install, run
library("devtools")
install_github("krisrs1128/centroidview")
and then to see an example application, use
library("centroidview")
example(centroidview)
The interactive display will either open a new browser or, if you're using
Rstudio, will appear in the plotting region. Click to free the view, double
click to introduce new clusters, and scroll to cycle through the clusters on the
screen. An example application of this package to real microbiome data is
available at http://statweb.stanford.edu/~kriss1/centroidview.html.
We know that the method of extracing tree coordinates in that example is not very elegant. In the future, we will provide helpers for constructing this type of input to the function.