GitHub - marcelTBI/BHGbuilder: Gets local minima list and tries to compute their saddles, landmap, and LM to LM energy barriers

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 117 Commits
BHGbuilder.cpp		BHGbuilder.cpp
BHGbuilder.ggo		BHGbuilder.ggo
BHGbuilder.h		BHGbuilder.h
Makefile		Makefile
README.txt		README.txt
RNAstruc.cpp		RNAstruc.cpp
RNAstruc.h		RNAstruc.h
RNAutils.cpp		RNAutils.cpp
RNAutils.h		RNAutils.h
RateGraph.cpp		RateGraph.cpp
RateGraph.h		RateGraph.h
circfold.inc		circfold.inc
clustering.cpp		clustering.cpp
exp_matrix.c		exp_matrix.c
exp_matrix.h		exp_matrix.h
findpath_pk.cpp		findpath_pk.cpp
findpath_pk.h		findpath_pk.h
flooding.cpp		flooding.cpp
graph_tech.cpp		graph_tech.cpp
hash_util.h		hash_util.h
main.cpp		main.cpp
move_set_pk.cpp		move_set_pk.cpp
move_set_pk.h		move_set_pk.h
mxccm.c		mxccm.c
mxccm.h		mxccm.h
pknots.cpp		pknots.cpp
pknots.h		pknots.h

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BHGbuilder
==========

Constructs basin hopping graph abstraction of a part of landscape defined by local minima in input.


Installation
============

First make sure that you have ViennaRNA package installed and that paths in Makefile: 

"ViennaRNA" points to header files ("H" directory in ViennaRNA)
"ViennaLIB" points to "libRNA.a" library

Then make sure you have "gengetopt" installed and your g++ compiler supports c++11 standard.
Then simple "make" should do it.