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66 Open 631 Closed
66 Open 631 Closed
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Issues list

Remove the "Incomplete adapter sequence" warning
#780 opened Apr 23, 2024 by marcelm
Error: BiocParallel errors
#779 opened Apr 23, 2024 by ThibauldMichel
4
Pipe multiple adatper trimming steps is unsupported when using the python API.
#777 opened Apr 21, 2024 by y9c
Ensuring to find the correct file after Demultiplexing my 16S amplicon raw dataset with combinatorial dual indexes cutadapt command
#776 opened Apr 16, 2024 by JayalalKJ
5
Feature request: Support for multiple FastQ pairs
#775 opened Mar 27, 2024 by Redmar-van-den-Berg
FYI: Macos-14 runners available for M1 macs.
#770 opened Mar 18, 2024 by rhpvorderman
1
Vectorize alignment algorithm for x86-64
#768 opened Mar 15, 2024 by rhpvorderman
Output of demultiplexing mixed oriented reads
#764 opened Mar 1, 2024 by luigallucci
5
When demultiplexing, report contains irrelevant line
#760 opened Feb 2, 2024 by marcelm
feature request: ubam support?
#757 opened Jan 25, 2024 by eboyden
4
sc/snATAC-seq barcode correction
#754 opened Jan 10, 2024 by sknaack
5
poly-A trimming for paired-end data - consider orientation
#753 opened Jan 5, 2024 by benemead
2
Question about the paired-end read trimming.
#751 opened Jan 3, 2024 by chaibenl
1
Feature request: ONT Chimeric read splitting
#747 opened Dec 12, 2023 by rhpvorderman
1
Small ONT optimization: length filtering before applying trimming
#743 opened Nov 29, 2023 by rhpvorderman
1
Write a user guide specifically for ONT data
#742 opened Nov 29, 2023 by rhpvorderman
18
Add --trimmed-poly-a-only for poly-a as --trimmed-only for adapter
#740 opened Nov 7, 2023 by a92932000
Add Reverse Complement modification function.
#737 opened Nov 1, 2023 by galaxy001
3
UMI '--rename' regex/utility feature-request
#736 opened Oct 21, 2023 by joegeorgeson
1
Remove instead of cut adapter
#716 opened Jul 6, 2023 by EivindStensrud
2
Limiting the search to the first n characters
#709 opened May 29, 2023 by ramongallego
2
The performance for the long read, and comparison with porechop
#705 opened May 24, 2023 by Flower9618
5
Filtering reads based on low-quality base ratio
#699 opened Apr 27, 2023 by gilstel
5
Allow --revcomp to output original orientation reads
#698 opened Apr 19, 2023 by leonorpalmeira
2
-G does not behave as expected, i.e. as -g for R2.
#692 opened Apr 5, 2023 by ryandward
3
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