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It was chosen because it contains the version info that we want to display. As long as we can get that information in some other way (maintaining backward compatibility for older version of PyQt), we should be fine.
Are you actually testing from a development branch of SIP. The issue does not exist with for me with pyqt build against the latest version of sip 4.15.5
From http://pyqt.sourceforge.net/Docs/PyQt4/build_system.html :
"SIP v5 will not provide an equivalent of the pyqtconfig module"
setupext.py:
This check failed for me after installing latest PyQt4
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