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Having the alpha kwarg as a scalar only is deep-seated in mpl; I don't think it makes sense to start changing this piecemeal, if at all. If you want an array of colors with varying alpha, it makes more sense to make the appropriate rgba array, as you show above. If you need it often, you could make a little helper function.
Would it make sense for scatter to take an array for alpha that sets the alpha for each point?
For example, with data like:
I have to do something like this:
but it could just be like this:
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