savefig crashes with malloc error on os x #4359

nilsbecker · 2015-04-20T14:45:30Z

this happens on saving to pdf, not to png, after a recent update of the anaconda distribution.

further details are in ipython/ipython#8266

the os x crash report is

Process:               python [2414]
Path:                  /Users/USER/*/python.app/Contents/MacOS/python
Identifier:            com.continuum.python
Version:               ???
Code Type:             X86-64 (Native)
Parent Process:        bash [2413]
Responsible:           iTerm [260]
User ID:               1077

Date/Time:             2015-04-20 16:41:11.968 +0200
OS Version:            Mac OS X 10.10.2 (14C1514)
Report Version:        11
Anonymous UUID:        8CD3F760-7756-6A26-0751-9D62B126E472

Sleep/Wake UUID:       C3AA3AC6-4B5B-440D-81E4-81428CAEE76E

Time Awake Since Boot: 880000 seconds
Time Since Wake:       19000 seconds

Crashed Thread:        0  Dispatch queue: com.apple.main-thread

Exception Type:        EXC_CRASH (SIGABRT)
Exception Codes:       0x0000000000000000, 0x0000000000000000

Application Specific Information:
abort() called
*** error for object 0x27a5a7a60: pointer being freed was not allocated


Thread 0 Crashed:: Dispatch queue: com.apple.main-thread
0   libsystem_kernel.dylib          0x00007fff8edd9286 __pthread_kill + 10
1   libsystem_c.dylib               0x00007fff94e12b53 abort + 129
2   libsystem_malloc.dylib          0x00007fff87c9e937 free + 428
3   libfreetype.6.dylib             0x0000000107800795 ft_free + 25
4   libfreetype.6.dylib             0x000000010780d733 ft_mem_free + 41
5   libfreetype.6.dylib             0x000000010780289e FT_Stream_Free + 62
6   libfreetype.6.dylib             0x0000000107803b16 destroy_face + 257
7   libfreetype.6.dylib             0x0000000107805a96 FT_Done_Face + 206
8   ft2font.so                      0x0000000106e5555d FT2Font::~FT2Font() + 109
9   ft2font.so                      0x0000000106e554bf FT2Font::~FT2Font() + 15
10  ft2font.so                      0x0000000106e6eb88 Py::PythonClass<FT2Font>::extension_object_deallocator(_object*) + 24
11  libpython2.7.dylib              0x000000010003d15d frame_dealloc + 125
12  libpython2.7.dylib              0x00000001000c5bc9 PyEval_EvalCodeEx + 937
13  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
14  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
15  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
16  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
17  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
18  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
19  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
20  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
21  libpython2.7.dylib              0x000000010003e4d0 function_call + 176
22  libpython2.7.dylib              0x000000010000cab2 PyObject_Call + 98
23  libpython2.7.dylib              0x00000001000bedca PyEval_EvalFrameEx + 4586
24  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
25  libpython2.7.dylib              0x000000010003e4d0 function_call + 176
26  libpython2.7.dylib              0x000000010000cab2 PyObject_Call + 98
27  libpython2.7.dylib              0x00000001000bedca PyEval_EvalFrameEx + 4586
28  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
29  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
30  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
31  libpython2.7.dylib              0x00000001000c5635 PyEval_EvalFrameEx + 31317
32  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
33  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
34  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
35  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
36  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
37  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
38  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
39  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
40  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
41  libpython2.7.dylib              0x000000010003e4d0 function_call + 176
42  libpython2.7.dylib              0x000000010000cab2 PyObject_Call + 98
43  libpython2.7.dylib              0x00000001000bedca PyEval_EvalFrameEx + 4586
44  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
45  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
46  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
47  libpython2.7.dylib              0x000000010003e4d0 function_call + 176
48  libpython2.7.dylib              0x000000010000cab2 PyObject_Call + 98
49  libpython2.7.dylib              0x00000001000bedca PyEval_EvalFrameEx + 4586
50  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
51  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
52  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
53  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
54  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
55  libpython2.7.dylib              0x00000001000c5635 PyEval_EvalFrameEx + 31317
56  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
57  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
58  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
59  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
60  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
61  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
62  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
63  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
64  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
65  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
66  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
67  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
68  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
69  libpython2.7.dylib              0x000000010003e4d0 function_call + 176
70  libpython2.7.dylib              0x000000010000cab2 PyObject_Call + 98
71  libpython2.7.dylib              0x00000001000bedca PyEval_EvalFrameEx + 4586
72  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
73  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
74  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
75  libpython2.7.dylib              0x00000001000c6186 PyEval_EvalCode + 54
76  libpython2.7.dylib              0x00000001000eb43e PyRun_FileExFlags + 174
77  libpython2.7.dylib              0x00000001000eb6da PyRun_SimpleFileExFlags + 458
78  libpython2.7.dylib              0x000000010010272d Py_Main + 3165
79  com.continuum.python            0x0000000100000f54 start + 52

Thread 1:
0   libsystem_kernel.dylib          0x00007fff8edd9136 __psynch_cvwait + 10
1   libpython2.7.dylib              0x00000001000ffa54 PyThread_acquire_lock + 116
2   libpython2.7.dylib              0x0000000100104535 lock_PyThread_acquire_lock + 69
3   libpython2.7.dylib              0x00000001000c3d7d PyEval_EvalFrameEx + 24989
4   libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
5   libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
6   libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
7   libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
8   libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
9   libpython2.7.dylib              0x000000010003e4d0 function_call + 176
10  libpython2.7.dylib              0x000000010000cab2 PyObject_Call + 98
11  libpython2.7.dylib              0x00000001000bedca PyEval_EvalFrameEx + 4586
12  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
13  libpython2.7.dylib              0x00000001000c40d0 PyEval_EvalFrameEx + 25840
14  libpython2.7.dylib              0x00000001000c541b PyEval_EvalFrameEx + 30779
15  libpython2.7.dylib              0x00000001000c541b PyEval_EvalFrameEx + 30779
16  libpython2.7.dylib              0x00000001000c6063 PyEval_EvalCodeEx + 2115
17  libpython2.7.dylib              0x000000010003e4d0 function_call + 176
18  libpython2.7.dylib              0x000000010000cab2 PyObject_Call + 98
19  libpython2.7.dylib              0x000000010001dfed instancemethod_call + 333
20  libpython2.7.dylib              0x000000010000cab2 PyObject_Call + 98
21  libpython2.7.dylib              0x00000001000bc927 PyEval_CallObjectWithKeywords + 87
22  libpython2.7.dylib              0x0000000100104a47 t_bootstrap + 71
23  libsystem_pthread.dylib         0x00007fff8a775268 _pthread_body + 131
24  libsystem_pthread.dylib         0x00007fff8a7751e5 _pthread_start + 176
25  libsystem_pthread.dylib         0x00007fff8a77341d thread_start + 13

Thread 2:
0   libsystem_kernel.dylib          0x00007fff8edd9136 __psynch_cvwait + 10
1   interpreter.so                  0x00000001050d80af th_worker(void*) + 191
2   libsystem_pthread.dylib         0x00007fff8a775268 _pthread_body + 131
3   libsystem_pthread.dylib         0x00007fff8a7751e5 _pthread_start + 176
4   libsystem_pthread.dylib         0x00007fff8a77341d thread_start + 13

Thread 3:
0   libsystem_kernel.dylib          0x00007fff8edd9136 __psynch_cvwait + 10
1   interpreter.so                  0x00000001050d80af th_worker(void*) + 191
2   libsystem_pthread.dylib         0x00007fff8a775268 _pthread_body + 131
3   libsystem_pthread.dylib         0x00007fff8a7751e5 _pthread_start + 176
4   libsystem_pthread.dylib         0x00007fff8a77341d thread_start + 13

Thread 4:
0   libsystem_kernel.dylib          0x00007fff8edd9136 __psynch_cvwait + 10
1   interpreter.so                  0x00000001050d80af th_worker(void*) + 191
2   libsystem_pthread.dylib         0x00007fff8a775268 _pthread_body + 131
3   libsystem_pthread.dylib         0x00007fff8a7751e5 _pthread_start + 176
4   libsystem_pthread.dylib         0x00007fff8a77341d thread_start + 13

Thread 5:
0   libsystem_kernel.dylib          0x00007fff8edd9136 __psynch_cvwait + 10
1   interpreter.so                  0x00000001050d80af th_worker(void*) + 191
2   libsystem_pthread.dylib         0x00007fff8a775268 _pthread_body + 131
3   libsystem_pthread.dylib         0x00007fff8a7751e5 _pthread_start + 176
4   libsystem_pthread.dylib         0x00007fff8a77341d thread_start + 13

Thread 6:: Dispatch queue: com.apple.libdispatch-manager
0   libsystem_kernel.dylib          0x00007fff8edda232 kevent64 + 10
1   libdispatch.dylib               0x00007fff8e1f4a6a _dispatch_mgr_thread + 52

Thread 7:: com.apple.CFSocket.private
0   libsystem_kernel.dylib          0x00007fff8edd93fa __select + 10
1   libsystem_pthread.dylib         0x00007fff8a775268 _pthread_body + 131
2   libsystem_pthread.dylib         0x00007fff8a7751e5 _pthread_start + 176
3   libsystem_pthread.dylib         0x00007fff8a77341d thread_start + 13

Thread 0 crashed with X86 Thread State (64-bit):
  rax: 0x0000000000000000  rbx: 0x0000000000000006  rcx: 0x00007fff5fbf9698  rdx: 0x0000000000000000
  rdi: 0x0000000000000513  rsi: 0x0000000000000006  rbp: 0x00007fff5fbf96c0  rsp: 0x00007fff5fbf9698
   r8: 0x0000000000000001   r9: 0x0000000000000000  r10: 0x0000000008000000  r11: 0x0000000000000206
  r12: 0x000000010026b000  r13: 0x0000000000000004  r14: 0x00007fff77b1e300  r15: 0x0000000000000000
  rip: 0x00007fff8edd9286  rfl: 0x0000000000000206  cr2: 0x00007fff79463fd8

Logical CPU:     0
Error Code:      0x02000148
Trap Number:     133


Binary Images:
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External Modification Summary:
  Calls made by other processes targeting this process:
    task_for_pid: 105
    thread_create: 0
    thread_set_state: 0
  Calls made by this process:
    task_for_pid: 0
    thread_create: 0
    thread_set_state: 0
  Calls made by all processes on this machine:
    task_for_pid: 38453144
    thread_create: 3
    thread_set_state: 0

VM Region Summary:
ReadOnly portion of Libraries: Total=224.0M resident=100.5M(45%) swapped_out_or_unallocated=123.6M(55%)
Writable regions: Total=4.5G written=683.7M(15%) resident=4.1G(92%) swapped_out=272.3M(6%) unallocated=372.7M(8%)

REGION TYPE                      VIRTUAL
===========                      =======
CG backing stores                  5836K
CG image                              4K
CG shared images                    176K
CoreServices                       1540K
CoreUI image data                    64K
Dispatch continuations             8192K
Image IO                             28K
Kernel Alloc Once                     8K
MALLOC                              4.5G
MALLOC (admin)                       32K
STACK GUARD                        56.0M
Stack                              14.6M
VM_ALLOCATE                        1148K
__DATA                             19.8M
__IMAGE                             528K
__LINKEDIT                         80.3M
__TEXT                            143.7M
__UNICODE                           544K
mapped file                        52.6M
shared memory                         4K
===========                      =======
TOTAL                               4.8G

Model: MacBookPro11,1, BootROM MBP111.0138.B14, 2 processors, Intel Core i5, 2.4 GHz, 8 GB, SMC 2.16f68
Graphics: Intel Iris, Intel Iris, Built-In
Memory Module: BANK 0/DIMM0, 4 GB, DDR3, 1600 MHz, 0x802C, 0x384B54463531323634485A2D314736453120
Memory Module: BANK 1/DIMM0, 4 GB, DDR3, 1600 MHz, 0x802C, 0x384B54463531323634485A2D314736453120
AirPort: spairport_wireless_card_type_airport_extreme (0x14E4, 0x112), Broadcom BCM43xx 1.0 (7.15.159.13.12)
Bluetooth: Version 4.3.2f6 15235, 3 services, 19 devices, 1 incoming serial ports
Network Service: Thunderbolt Ethernet, Ethernet, en3
PCI Card: Apple 57762-A0, Ethernet Controller, Thunderbolt@195,0,0
Serial ATA Device: APPLE SSD SM0256F, 251 GB
USB Device: Internal Memory Card Reader
USB Device: Hub
USB Device: XT1039
USB Device: Elements 10B8
USB Device: Apple Internal Keyboard / Trackpad
USB Device: BRCM20702 Hub
USB Device: Bluetooth USB Host Controller
Thunderbolt Bus: MacBook Pro, Apple Inc., 17.2
Thunderbolt Device: Thunderbolt to Gigabit Ethernet Adapter, Apple Inc., 1, 5.5

The text was updated successfully, but these errors were encountered:

nilsbecker · 2015-04-20T15:02:21Z

as mentioned above, i think it's likely that this was introduced between the current version

matplotlib 1.4.3 np19py27_1

in anaconda and the previous released version since i have been using the same script to save pdfs quite regularly.

tacaswell · 2015-04-20T18:04:26Z

attn @jkseppan

jkseppan · 2015-04-20T18:12:38Z

@nilsbecker Does it only happen with usetex=True? I wonder what fonts you're getting. If this is reproducible, could you rerun with --verbose-debug and send the output (see troubleshooting faq)?

jenshnielsen · 2015-04-20T18:20:43Z

If I understand this correctly the bug appeared between matplotlib 1.4.3 np19py27_1 and matplotlib 1.4.3 np19py27_0 I think the anaconda version was bumped for a new freetype version.

Can you use conda list to check which freetype version you have?

jkseppan · 2015-04-20T18:31:30Z

Oh, that rings a bell: there was a freetype bug that caused some examples to fail on some versions of Ubuntu.

#2916
http://savannah.nongnu.org/bugs/?40997
https://bugs.launchpad.net/freetype/+bug/1310728

But that was early 2014, it would be odd to see that exact bug in Anaconda now. In any case, the exact version of freetype is interesting.

nilsbecker · 2015-04-20T18:33:09Z

ok, freetype version from conda list

freetype 2.5.2 0

and indeed, usetex was on, and when i switch usetex off, i am able to save a pdf without crash. i then switch it back on, and voila, crash.

have not yet done the --verbose-debug thing. does that also work in an interactive ipython shell?

jkseppan · 2015-04-20T18:38:57Z

Ubuntu's fix was in Freetype 2.5.2-1ubuntu3, so if Anaconda has something called "2.5.2 0" it could very well have that exact bug.

To set the verbosity from the interactive shell, I think you'd do something like

from matplotlib import verbose
verbose.set_level('debug')

as early as possible.

jkseppan · 2015-04-20T18:44:22Z

This is probably the same as ContinuumIO/anaconda-issues#309

nilsbecker · 2015-04-20T18:52:23Z

ok, so i have run it with the debug flag. the output is long. near the end i save the same figure first as png, then as pdf, which is when it crashes.

these are the last few lines of the output file. do you need more?

Dvi._xxx: encountered special: papersize=5203.43999pt,5203.43999pt
Dvi: /Users/nbecker/.matplotlib/tex.cache/d0d27337b356c9ac614b6b5e6212230e.dvi
Dvi._xxx: encountered special: papersize=5203.43999pt,5203.43999pt
Dvi: /Users/nbecker/.matplotlib/tex.cache/464903efd6449c8b1be0a9d4da8753c3.dvi
Dvi._xxx: encountered special: papersize=5203.43999pt,5203.43999pt
Dvi: /Users/nbecker/.matplotlib/tex.cache/464903efd6449c8b1be0a9d4da8753c3.dvi
Dvi._xxx: encountered special: papersize=5203.43999pt,5203.43999pt
Dvi: /Users/nbecker/.matplotlib/tex.cache/d0d27337b356c9ac614b6b5e6212230e.dvi
Dvi._xxx: encountered special: papersize=5203.43999pt,5203.43999pt
Dvi: /Users/nbecker/.matplotlib/tex.cache/2184808e68ff8554f6c0b39e0011d3d1.dvi
Dvi._xxx: encountered special: papersize=5203.43999pt,5203.43999pt
Dvi: /Users/nbecker/.matplotlib/tex.cache/2184808e68ff8554f6c0b39e0011d3d1.dvi
Dvi._xxx: encountered special: papersize=5203.43999pt,5203.43999pt
Dvi: /Users/nbecker/.matplotlib/tex.cache/d0d27337b356c9ac614b6b5e6212230e.dvi
Dvi._xxx: encountered special: papersize=5203.43999pt,5203.43999pt
Dvi: /Users/nbecker/.matplotlib/tex.cache/f783765f4c2644ed9fbf3d50979116ba.dvi
Dvi._xxx: encountered special: papersize=5203.43999pt,5203.43999pt
Dvi: /Users/nbecker/.matplotlib/tex.cache/f783765f4c2644ed9fbf3d50979116ba.dvi
Dvi._xxx: encountered special: papersize=5203.43999pt,5203.43999pt
Embedding font ebmr10
Writing Type-1 font
Embedding TeX font ebmr10 - fontinfo={'basefont': 'SFBMR10', 'fontfile': u'/usr/local/texlive/2014/texmf-dist/fonts/type1/public/cm-super/sfbmr10.pfb', 'encodingfile': u'/usr/local/texlive/2014/texmf-dist/fonts/enc/dvips/cm-super/cm-super-t1.enc', 'effects': {}, 'dvifont': <matplotlib.dviread.DviFont object at 0x1085650b0>}

jkseppan · 2015-04-20T18:56:16Z

Actually I now believe it's most likely the same freetype bug as before, so the fix would be to get anaconda to update their freetype version. But if it turns out to be something else, I will be interested in the whole debug output, which you could e.g. paste into a gist and link from here.

nilsbecker · 2015-04-20T18:59:21Z

ok, it's here https://gist.github.com/nilsbecker/36426859c3883d803414

cosmicpudding · 2015-04-27T15:47:47Z

I am having the same bug (when using usetex=True, otherwise it saves fine), but according to "conda list", the freetype version is:

freetype 2.5.2 0

Any ideas yet on a fix for this?

tacaswell · 2015-04-27T15:53:23Z

@rhobslein This is a freetype bug, the solution is to update to at least 2.5.3.

tacaswell · 2015-04-27T15:54:38Z

We can probably put tighter constraints on the freetype version checking in our build process, but that won't help with the current situation.

cosmicpudding · 2015-04-27T15:54:58Z

Thanks @tacaswell -- I just downloaded and installed freetype 2.5.5, but "conda list" still says 2.5.2. Do I need to get it to point to the new version?

cosmicpudding · 2015-04-27T15:56:40Z

Apparently yes, it is still giving me the same error:

python(5140,0x7fff77786310) malloc: *** error for object 0x1007fbf50: pointer being freed was not allocated *** set a breakpoint in malloc_error_break to debug //anaconda/bin/python.app: line 3: 5140 Abort trap: 6 //anaconda/python.app/Contents/MacOS/python "$@"

sorry for the novice question, how do I get it to register the update? Thanks!

jenshnielsen · 2015-04-27T16:10:28Z

If you are using matplotlib from anaconda it is unlikely that it would build against any other version of
freetype that you install. Conda currently ships two different versions of matplotlib 1.4.3
np19py27_0 and np19py27_1

I think np19pyxx_0 is build against an older version of freetype that does not have this bug. Unless you have other issues you are probably better off downgrading to np19py27_0

I.e. if you are using python 2.7

conda install freetype=2.4.10
conda install matplotlib=1.4.3=np19py27_0

on 3.4

conda install freetype=2.4.10
conda install matplotlib=1.4.3=np19py34_0

ect/

jenshnielsen · 2015-04-27T16:12:50Z

@tacaswell it would probably be nice if we had a test that triggered this issue. But testing with tex on travis is difficult due to the old versions of tex that version of ubuntu ships

cosmicpudding · 2015-04-27T16:15:25Z

Yeah it failed dramatically and asked me if matplotlib was even installed.

I don't know if this is the same as what you recommend (probably yours is slightly better since it didn't roll back matplotlib too far), but this worked for me:

> sudo conda install matplotlib=1.3.1
Fetching package metadata: ....
Solving package specifications: .
Package plan for installation in environment //anaconda:

The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    numpy-1.8.2                |           py27_0         2.9 MB
    dateutil-2.4.1             |           py27_0         218 KB
    ------------------------------------------------------------
                                           Total:         3.1 MB

The following packages will be UPDATED:

    dateutil:   2.1-py27_2       --> 2.4.1-py27_0   

The following packages will be DOWNGRADED:

    freetype:   2.5.2-0          --> 2.4.10-1       
    matplotlib: 1.4.3-np19py27_1 --> 1.3.1-np18py27_1
    numpy:      1.9.2-py27_0     --> 1.8.2-py27_0   
    pyparsing:  2.0.3-py27_0     --> 2.0.1-py27_0   

Proceed ([y]/n)?

Fetching packages ...
numpy-1.8.2-py 100% |################################| Time: 0:00:02   1.29 MB/s
dateutil-2.4.1 100% |################################| Time: 0:00:00 356.46 kB/s
Extracting packages ...
[      COMPLETE      ]|###################################################| 100%
Unlinking packages ...
[      COMPLETE      ]|###################################################| 100%
Linking packages ...
[      COMPLETE      ]|###################################################| 100%

If I'm feeling brave later, I'll try your solution as well :)

jenshnielsen · 2015-04-27T16:18:22Z

Yes that is basically the same thing appart from the fact that you are rolling back to version 1.3.1 rather than a version which is just build against an older version of freetype.

Note that conda has virtual environments so you can always create a new env and experiment in.

cosmicpudding · 2015-04-27T16:31:38Z

Thanks, I just downgraded (upgraded!) to np19py27_0 as you suggested and it all works fine. I've never really used virtual environments but I'm beginning to see why people do!

tacaswell added the status: upstream fix required label Apr 27, 2015

tacaswell added this to the unassigned milestone Apr 27, 2015

tacaswell added the can't fix label Apr 27, 2015

tacaswell closed this as completed Dec 22, 2015

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savefig crashes with malloc error on os x #4359

savefig crashes with malloc error on os x #4359

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savefig crashes with malloc error on os x #4359

savefig crashes with malloc error on os x #4359

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