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e3d0d82b55ce6c748e5d9e9f08681d4171fbd612 2009-07-18T14:34:42-07:00 2009-07-18T14:34:42-07:00 truncated tests 223fe3dbc88254b0b037bb1f17dca661db459efd Rich Apodaca rapodaca@metamolecular.com 3eca88cf3593f1f39084a9afc2c3215fc7d592a7 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/4bf4b4de9cda8e2c2f5f17ef6817f56279b27ad9 4bf4b4de9cda8e2c2f5f17ef6817f56279b27ad9 2009-07-18T10:02:10-07:00 2009-07-18T10:02:10-07:00 pathwriter now writes ring closure paths in which branch has ring closure only and no atoms beyond branch 06d57859e20a00e6a305d41ad1f7094fd3e4bcce Rich Apodaca rapodaca@metamolecular.com 8305110928d57381955baeb5e033066e3e15d16c Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/3eca88cf3593f1f39084a9afc2c3215fc7d592a7 3eca88cf3593f1f39084a9afc2c3215fc7d592a7 2009-07-18T07:05:23-07:00 2009-07-18T07:05:23-07:00 removed commented code 2621c872b89264e3c10a4705d27efc4eced8e71b Rich Apodaca rapodaca@metamolecular.com 0c2c54e1a157b6a1e4891de30c9833b29710f891 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/8305110928d57381955baeb5e033066e3e15d16c 8305110928d57381955baeb5e033066e3e15d16c 2009-07-18T07:00:50-07:00 2009-07-18T07:00:50-07:00 removed nasty performance issue involving List.sublist 278be30ec7b0183f1b1b635b9f018b257fb7b87d Rich Apodaca rapodaca@metamolecular.com fd15030dd392a48edc2e2c4e85ce32e09bd21298 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/0c2c54e1a157b6a1e4891de30c9833b29710f891 0c2c54e1a157b6a1e4891de30c9833b29710f891 2009-07-17T17:38:30-07:00 2009-07-17T17:38:30-07:00 fixed counter loop 055ecca5a04211830665f3f165b7ef5a1c7e6108 Rich Apodaca rapodaca@metamolecular.com d2ab04b590f8167d57b253bdb7a60ad68220237b Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/fd15030dd392a48edc2e2c4e85ce32e09bd21298 fd15030dd392a48edc2e2c4e85ce32e09bd21298 2009-07-17T15:00:53-07:00 2009-07-17T15:00:53-07:00 default path length set to 7 for pathfingerprinter ebba5b954ee8056e8cc47a9578a5da705457155f Rich Apodaca rapodaca@metamolecular.com 6c189d47537ebdbf1b2c55bd6ed5248dd1687e15 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/d2ab04b590f8167d57b253bdb7a60ad68220237b d2ab04b590f8167d57b253bdb7a60ad68220237b 2009-07-10T16:55:47-07:00 2009-07-10T16:55:47-07:00 added bigmol mapper tests a92e781a4c0c14aae1392f3748bf3b665a514d3b Rich Apodaca rapodaca@metamolecular.com e546168cc02a78c86840bdd874c60ae5b1554e16 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/6c189d47537ebdbf1b2c55bd6ed5248dd1687e15 6c189d47537ebdbf1b2c55bd6ed5248dd1687e15 2009-07-01T18:00:51-07:00 2009-07-01T18:00:51-07:00 fix copyright date 5372866768d267ec6337feb852b90f36a7f84aae Rich Apodaca rapodaca@metamolecular.com 9542b28b7bba586573552b7abb47269b7462a664 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/e546168cc02a78c86840bdd874c60ae5b1554e16 e546168cc02a78c86840bdd874c60ae5b1554e16 2009-07-01T17:57:35-07:00 2009-07-01T17:57:35-07:00 tweaked license and readme 65e387c0b0c170b415c232e5ab679ce1b28fa27a Rich Apodaca rapodaca@metamolecular.com 8e39ba03e98b8a24706f496bc1e19facd27026e0 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/9542b28b7bba586573552b7abb47269b7462a664 9542b28b7bba586573552b7abb47269b7462a664 2009-07-01T17:43:30-07:00 2009-07-01T17:43:30-07:00 updated copyright notice, email addresses, build file, bumped release eaea98830abdc1f8bb9895c3bab4b27266a7ce8b Rich Apodaca rapodaca@metamolecular.com 16fb07f8179e4e119bd48f47f886231f4ad4a522 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/8e39ba03e98b8a24706f496bc1e19facd27026e0 8e39ba03e98b8a24706f496bc1e19facd27026e0 2009-07-01T16:57:57-07:00 2009-07-01T16:57:57-07:00 minor code cleanup 29a6be218aeefa0e4fd5074b85bfe6cc3b7cea00 Rich Apodaca rapodaca@metamolecular.com 89ac57dfa42324870810cfde2cc29b66e9a8123a Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/16fb07f8179e4e119bd48f47f886231f4ad4a522 16fb07f8179e4e119bd48f47f886231f4ad4a522 2009-07-01T16:41:37-07:00 2009-07-01T16:41:37-07:00 minor code cleanup 4dfa22007e6d8138e0dbba6255411fba956ca7e7 Rich Apodaca rapodaca@metamolecular.com 190e9a85d31d2f2c094d336d8db388aa7b80c421 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/89ac57dfa42324870810cfde2cc29b66e9a8123a 89ac57dfa42324870810cfde2cc29b66e9a8123a 2009-07-01T16:38:43-07:00 2009-07-01T16:38:43-07:00 removed unneeded test e94ec12aabebd717788fbcd4411ba1631e57726e Rich Apodaca rapodaca@metamolecular.com dab5cfcc294bd8e555b47b899ef0817dfd251ca3 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/190e9a85d31d2f2c094d336d8db388aa7b80c421 190e9a85d31d2f2c094d336d8db388aa7b80c421 2009-07-01T16:38:34-07:00 2009-07-01T16:38:34-07:00 removed unneeded test 9550f8b4960373796ae8eef1462c9a331a44e6aa Rich Apodaca rapodaca@metamolecular.com 08185b6e4e18fd95e8f0cb1f52694d18f315d68a Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/dab5cfcc294bd8e555b47b899ef0817dfd251ca3 dab5cfcc294bd8e555b47b899ef0817dfd251ca3 2009-07-01T16:37:24-07:00 2009-07-01T16:37:24-07:00 removed old path package - walk replaces it ceb52f196673f6dfc8701f7098d2759c87386ff1 Rich Apodaca rapodaca@metamolecular.com d6decea73425a6d3b695b9d7325e5fa0c0f77ff4 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/08185b6e4e18fd95e8f0cb1f52694d18f315d68a 08185b6e4e18fd95e8f0cb1f52694d18f315d68a 2009-07-01T16:34:54-07:00 2009-07-01T16:34:54-07:00 removed unneeded class d6814dc5dd2c45330eead4d9cf58d6373a6c9ab4 Rich Apodaca rapodaca@metamolecular.com b83e146dfcc5ba6a8c7b45dd2afd644b0d6fa24c Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/d6decea73425a6d3b695b9d7325e5fa0c0f77ff4 d6decea73425a6d3b695b9d7325e5fa0c0f77ff4 2009-07-01T16:30:50-07:00 2009-07-01T16:30:50-07:00 factored bloomfilter out of pathfingerprinter. Closes #13. 8ac1228de66eb1023db74dfc1e9d3d3024af7f55 Rich Apodaca rapodaca@metamolecular.com 3f7d0a1b79f3a2422d46839c357fbbeefa525f33 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/b83e146dfcc5ba6a8c7b45dd2afd644b0d6fa24c b83e146dfcc5ba6a8c7b45dd2afd644b0d6fa24c 2009-06-30T16:59:55-07:00 2009-06-30T16:59:55-07:00 pathwriter and tests 023b226369d1e84ea5108f6d3ea5aa32993bd36c Rich Apodaca rapodaca@metamolecular.com 02f6001bd123214221069feb03f0070b6b5665f2 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/3f7d0a1b79f3a2422d46839c357fbbeefa525f33 3f7d0a1b79f3a2422d46839c357fbbeefa525f33 2009-06-30T14:58:29-07:00 2009-06-30T14:58:29-07:00 foober writes paths to a collection b8448ced62c22a6219768927e86e9cbcb126a0c4 Rich Apodaca rapodaca@metamolecular.com 7c215e583315e5f40b5e4458ca0c2173b7f83641 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/02f6001bd123214221069feb03f0070b6b5665f2 02f6001bd123214221069feb03f0070b6b5665f2 2009-06-30T11:38:28-07:00 2009-06-30T11:38:28-07:00 more bloomfilter tests cef92e34c5485234bece389f7333608acfe4d54c Rich Apodaca rapodaca@metamolecular.com a5cdfd68008ec268b16e9a58eb377e42260d92f6 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/7c215e583315e5f40b5e4458ca0c2173b7f83641 7c215e583315e5f40b5e4458ca0c2173b7f83641 2009-06-30T11:32:44-07:00 2009-06-30T11:32:44-07:00 added bloomfilter test/impl 2d00c6f6ff537981773859c30b09297552f76104 Rich Apodaca rapodaca@metamolecular.com 1af40b99755f6f3b0e0e36e5ee9e4408cb0624ef Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/a5cdfd68008ec268b16e9a58eb377e42260d92f6 a5cdfd68008ec268b16e9a58eb377e42260d92f6 2009-06-30T09:03:07-07:00 2009-06-30T09:03:07-07:00 defaultstep tests a5a95db2fa9fa0829e237ad31a0312359dbf6bc0 Rich Apodaca rapodaca@metamolecular.com 36d044b6ca2f5ec8cc71db25545fa2a3ca368458 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/1af40b99755f6f3b0e0e36e5ee9e4408cb0624ef 1af40b99755f6f3b0e0e36e5ee9e4408cb0624ef 2009-06-29T21:54:58-07:00 2009-06-29T21:54:58-07:00 defaultstep tests 45c006a3b8aa9301ad716d457c0809528b5c9c58 Rich Apodaca rapodaca@metamolecular.com 265e25aff96152296538b04f63a9afebac8bedd0 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/36d044b6ca2f5ec8cc71db25545fa2a3ca368458 36d044b6ca2f5ec8cc71db25545fa2a3ca368458 2009-06-29T20:25:18-07:00 2009-06-29T20:25:18-07:00 rewrote tests to use no more than two steps at a time 4379ea24065ed71b998aab9f9e899df5b7139672 Rich Apodaca rapodaca@metamolecular.com 6d43268577aeaf24ff2bcdb30c5e87c4230fb91e Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/265e25aff96152296538b04f63a9afebac8bedd0 265e25aff96152296538b04f63a9afebac8bedd0 2009-06-28T09:24:48-07:00 2009-06-28T09:24:48-07:00 first defaultstep tests now pass da7143e43fa6e1072aeddbe207e104c7ae3f8d30 Rich Apodaca rapodaca@metamolecular.com 409af2819e3bbf356efd44820cf67164764df988 Richard Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/6d43268577aeaf24ff2bcdb30c5e87c4230fb91e 6d43268577aeaf24ff2bcdb30c5e87c4230fb91e 2009-06-27T22:58:54-07:00 2009-06-27T22:58:54-07:00 failing tests for defaultstep a63ff23c8b36c3b325443d31a54eb8f7176c6f4c Richard Apodaca rapodaca@metamolecular.com 22907ddc577df2747c6ac3d570babd3216958c66 Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/409af2819e3bbf356efd44820cf67164764df988 409af2819e3bbf356efd44820cf67164764df988 2009-06-27T22:02:28-07:00 2009-06-27T22:02:28-07:00 first failing test for new defaultstep 34415e1aafdbd2ea5c72acb3719dad564cc1903d Rich Apodaca rapodaca@metamolecular.com 69832817633c1cee5a4a66fc39082a6e9a7b4b2d Rich Apodaca rapodaca@metamolecular.com http://github.com/metamolecular/mx/commit/22907ddc577df2747c6ac3d570babd3216958c66 22907ddc577df2747c6ac3d570babd3216958c66 2009-06-27T18:02:00-07:00 2009-06-27T18:02:00-07:00 walker reports ring closure fa142b82fcbcbbd55ffbca163ea5d86b74f6e9f6 Rich Apodaca rapodaca@metamolecular.com