require 'pathname'
ROOT = Pathname.new(File.join(File.join(File.dirname(__FILE__),'..','..'))).cleanpath.to_s
$:.unshift(ROOT)
require 'config/environment'
FIXTURES_DIR = Pathname.new(File.join(File.join(File.dirname(__FILE__)))).cleanpath.to_s
def dump_models(models)
hash = models.inject(Hash.new) do |hash,model|
hash[model.id] = model.attributes
hash
end
File.open(File.join(FIXTURES_DIR,"#{models.first.class.table_name}.yml"),'w') do |file|
file.puts(YAML.dump(hash))
end
end
dump_models(Condition.all)
dump_models(CostType.all)
dump_models(AminoAcid.all)
dump_models(AminoAcidCost.all)
gene = Gene.find_by_name('YDL177C')
dump_models([gene])
align = gene.alignments
dump_models(align)
dump_models(align.first.gene_mutations)
codons = align.first.alignment_codons
dump_models(codons)
mutations = codons.map{|c| c.site_mutation}
dump_models(mutations)
frequencies = codons.map{|c| c.amino_acid_frequencies}.flatten
dump_models(frequencies)
codon_costs = codons.map{|c| c.alignment_codon_costs}.flatten
dump_models(codon_costs)
