@@ -0,0 +1,36 @@ +This a set of bioinformatics experiments as well as a dynamic webpage to display the results + +## model + +This directory contains a set of datamapper classes that allow rows in the database to be manipulated as simple ruby objects. + + * project.rb Main class that describes the entire project + * gene.rb Holds sequence data about yeast genes + +## config + +Contains general ruby configuration data, as well as ramaze configuration + +* environment.rb Requires necessary ruby gems. Loads databases parameters. Loads classes and controllers. +* database.yml Database access parameters. In YAML format. Should be created for each installation of this code. +* config,yml General project configuration parameters. Ramaze port, server, and rendering engine. Should also be configured for each installation. + +## controller + +Ramaze controllers that serve up data to views + +## view + +HTML generators for www front + +## spec + +Data testing classes using rspec + +## analysis + +Rake files and data that run the bioinformatics analysis. Organised by linear running order, ie 002 should only depend on data from 001, and nothing from 003. + +## start.rb + +Starts the ramaze web server README 68a546f2ebb63d3d26378b11c5adc06e51516f90 Michael Barton mail@michaelbarton.me.uk http://github.com/michaelbarton/cost_in_evolution/commit/31cad02da7588d28f65e3c76c9adda939063b3ee 31cad02da7588d28f65e3c76c9adda939063b3ee 2008-05-06T05:05:02-07:00 2008-05-06T05:05:02-07:00 Updated project README file. b26b01659ef5818c3ef5d43d20800de616bf6ac7 Michael Barton mail@michaelbarton.me.uk