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Description:
Homepage: http://www.michaelbarton.me.uk
Clone URL: git://github.com/michaelbarton/cost_in_evolution.git 
generate_fixtures.rb now produces fixtures for alignment codon costs
michaelbarton (author)
Thu Oct 09 04:16:58 -0700 2008
commit  70c5d4b972f0677c6855f586581729ab16093986
tree    2e8148a8424b9e1cabe83d3f9c39482a6dc1473e
parent  b38513681039a6b39033434e631b6a7ce198a50f
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spec/fixtures/generate_fixtures.rb 
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@@ -1,5 +1,9 @@
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 require 'pathname'
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-require Pathname.new(File.join(File.join(File.dirname(__FILE__),'..','..','config','environment.rb'))).cleanpath.to_s
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+
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+ROOT = Pathname.new(File.join(File.join(File.dirname(__FILE__),'..','..'))).cleanpath.to_s
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+$:.unshift(ROOT)
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+
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+require 'config/environment'
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 FIXTURES_DIR = Pathname.new(File.join(File.join(File.dirname(__FILE__)))).cleanpath.to_s
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@@ -33,3 +37,6 @@ dump_models(mutations)
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 frequencies = codons.map{|c| c.amino_acid_frequencies}.flatten
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 dump_models(frequencies)
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+
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+codon_costs = codons.map{|c| c.alignment_codon_costs}.flatten
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+dump_models(codon_costs)

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