{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":45682621,"defaultBranch":"master","name":"EpiEstim","ownerLogin":"mrc-ide","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2015-11-06T13:09:56.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/25453642?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1707306419.0","currentOid":""},"activityList":{"items":[{"before":"6cf422c15cefba9ec01c9be6bb187f1bc597998e","after":"9cc5cda35e95273b219886793160384c40de4626","ref":"refs/heads/r0_correction","pushedAt":"2024-03-24T21:45:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abriz97","name":"Andrea Brizzi","path":"/abriz97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40828662?s=80&v=4"},"commit":{"message":"linting","shortMessageHtmlLink":"linting"}},{"before":"a8d867994f02448ea8dd0fe5955c4b26db99fc9e","after":"6cf422c15cefba9ec01c9be6bb187f1bc597998e","ref":"refs/heads/r0_correction","pushedAt":"2024-03-24T19:41:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abriz97","name":"Andrea Brizzi","path":"/abriz97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40828662?s=80&v=4"},"commit":{"message":"Document backimpute_I","shortMessageHtmlLink":"Document backimpute_I"}},{"before":"2cf117de20daad80e6c47eb2e2a6710267aef842","after":"a8d867994f02448ea8dd0fe5955c4b26db99fc9e","ref":"refs/heads/r0_correction","pushedAt":"2024-03-24T19:31:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"abriz97","name":"Andrea Brizzi","path":"/abriz97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40828662?s=80&v=4"},"commit":{"message":"[update] documentation\n\nthrough\ndevtools::document()","shortMessageHtmlLink":"[update] documentation"}},{"before":"f87a71a88fe7a02da3301c9d9b41b877efde73b2","after":"2cf117de20daad80e6c47eb2e2a6710267aef842","ref":"refs/heads/r0_correction","pushedAt":"2024-03-24T19:03:52.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"abriz97","name":"Andrea Brizzi","path":"/abriz97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40828662?s=80&v=4"},"commit":{"message":"Merge branch 'r0_correction' of github.com:mrc-ide/EpiEstim into r0_correction","shortMessageHtmlLink":"Merge branch 'r0_correction' of github.com:mrc-ide/EpiEstim into r0_c…"}},{"before":"dc512c3fd996d71372ecee0425579d86887aba30","after":"f87a71a88fe7a02da3301c9d9b41b877efde73b2","ref":"refs/heads/r0_correction","pushedAt":"2024-03-15T14:38:34.000Z","pushType":"push","commitsCount":30,"pusher":{"login":"abriz97","name":"Andrea Brizzi","path":"/abriz97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40828662?s=80&v=4"},"commit":{"message":"Merge branch 'master' into r0_correction","shortMessageHtmlLink":"Merge branch 'master' into r0_correction"}},{"before":"4f1fca4573fd5b456558acb9ba8ba7cd035a498c","after":"e475635813021248f8ff21299aee3df43b30e90c","ref":"refs/heads/na_bug","pushedAt":"2024-02-07T11:49:22.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"annecori","name":"anne cori","path":"/annecori","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6973431?s=80&v=4"},"commit":{"message":"bump version number","shortMessageHtmlLink":"bump version number"}},{"before":null,"after":"4f1fca4573fd5b456558acb9ba8ba7cd035a498c","ref":"refs/heads/na_bug","pushedAt":"2024-02-07T11:46:59.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"annecori","name":"anne cori","path":"/annecori","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6973431?s=80&v=4"},"commit":{"message":"fix bug in process_I and add test","shortMessageHtmlLink":"fix bug in process_I and add test"}},{"before":"f13a187e6c04d34ec776fae580e3af2446c3b36a","after":"075fadcc976977371cc8c6330a226d7f74e732d7","ref":"refs/heads/gh-pages","pushedAt":"2023-10-05T07:49:34.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Built site for EpiEstim: 2.4@88c9894","shortMessageHtmlLink":"Built site for EpiEstim: 2.4@88c9894"}},{"before":"4cfb1d4c89bf9e312566be22280fc87fc7d1b413","after":null,"ref":"refs/heads/plots","pushedAt":"2023-10-05T07:44:55.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"annecori","name":"anne cori","path":"/annecori","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6973431?s=80&v=4"}},{"before":"a0d025b518db8dc9e2ab3da887e54393f7ddf533","after":"88c9894392a5c5d777c1528bc29732d8edef1c2e","ref":"refs/heads/master","pushedAt":"2023-10-05T07:44:51.000Z","pushType":"pr_merge","commitsCount":14,"pusher":{"login":"annecori","name":"anne cori","path":"/annecori","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6973431?s=80&v=4"},"commit":{"message":"Merge pull request #163 from mrc-ide/plots\n\nPlots","shortMessageHtmlLink":"Merge pull request #163 from mrc-ide/plots"}},{"before":"f78447424a1a7f288bed2672ff52116233eb902c","after":"4cfb1d4c89bf9e312566be22280fc87fc7d1b413","ref":"refs/heads/plots","pushedAt":"2023-10-04T14:27:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"fix lint warnings","shortMessageHtmlLink":"fix lint warnings"}},{"before":"3cdf1e886d8addfb58f0cc3117d392869fed3b0b","after":"f78447424a1a7f288bed2672ff52116233eb902c","ref":"refs/heads/plots","pushedAt":"2023-10-04T13:37:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"update man plot file","shortMessageHtmlLink":"update man plot file"}},{"before":"d0c3c6722cc8554a5614bfc01f0be036eefdaebe","after":"3cdf1e886d8addfb58f0cc3117d392869fed3b0b","ref":"refs/heads/plots","pushedAt":"2023-10-04T11:55:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"add gghighlight","shortMessageHtmlLink":"add gghighlight"}},{"before":"b12a32567c0fbb5eb1149525b9595e8828f457a3","after":"d0c3c6722cc8554a5614bfc01f0be036eefdaebe","ref":"refs/heads/plots","pushedAt":"2023-10-04T11:18:08.000Z","pushType":"push","commitsCount":6,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"remove gghighlight","shortMessageHtmlLink":"remove gghighlight"}},{"before":"cae5cf226e4d82d987c7bf63422669074468ee4d","after":"b12a32567c0fbb5eb1149525b9595e8828f457a3","ref":"refs/heads/plots","pushedAt":"2023-10-04T09:23:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"new theme edits","shortMessageHtmlLink":"new theme edits"}},{"before":"874fe00f8d3ca0ee604e935eb93c2a37dd7cf3c8","after":"cae5cf226e4d82d987c7bf63422669074468ee4d","ref":"refs/heads/plots","pushedAt":"2023-10-03T16:09:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"new plot theme","shortMessageHtmlLink":"new plot theme"}},{"before":null,"after":"874fe00f8d3ca0ee604e935eb93c2a37dd7cf3c8","ref":"refs/heads/plots","pushedAt":"2023-09-26T08:44:49.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"move legend to align axes","shortMessageHtmlLink":"move legend to align axes"}},{"before":"860a7794d6699da3541db4352ac49353f35c7d3b","after":"dc512c3fd996d71372ecee0425579d86887aba30","ref":"refs/heads/r0_correction","pushedAt":"2023-08-21T17:14:21.000Z","pushType":"push","commitsCount":7,"pusher":{"login":"abriz97","name":"Andrea Brizzi","path":"/abriz97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40828662?s=80&v=4"},"commit":{"message":"[add] citations","shortMessageHtmlLink":"[add] citations"}},{"before":"4bff2f7ac09a990ab007c84da878edd6b48826a3","after":"860a7794d6699da3541db4352ac49353f35c7d3b","ref":"refs/heads/r0_correction","pushedAt":"2023-08-21T14:54:23.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"abriz97","name":"Andrea Brizzi","path":"/abriz97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40828662?s=80&v=4"},"commit":{"message":"[clean up] based on lintr","shortMessageHtmlLink":"[clean up] based on lintr"}},{"before":"fb462a2bf370d2e5866bce1217958597ee5d8d92","after":"f13a187e6c04d34ec776fae580e3af2446c3b36a","ref":"refs/heads/gh-pages","pushedAt":"2023-07-03T14:59:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"github-actions[bot]","name":null,"path":"/apps/github-actions","primaryAvatarUrl":"https://avatars.githubusercontent.com/in/15368?s=80&v=4"},"commit":{"message":"Built site for EpiEstim: 2.4@a0d025b","shortMessageHtmlLink":"Built site for EpiEstim: 2.4@a0d025b"}},{"before":"5e5091cb55aebfed5ceab167270751623f26bd72","after":null,"ref":"refs/heads/recon_opt","pushedAt":"2023-07-03T14:52:25.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"annecori","name":"anne cori","path":"/annecori","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6973431?s=80&v=4"}},{"before":"ffb6dc0affd5899923858d676f0fe54d6a160ad4","after":"a0d025b518db8dc9e2ab3da887e54393f7ddf533","ref":"refs/heads/master","pushedAt":"2023-07-03T14:52:17.000Z","pushType":"pr_merge","commitsCount":15,"pusher":{"login":"annecori","name":"anne cori","path":"/annecori","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/6973431?s=80&v=4"},"commit":{"message":"Merge pull request #160 from mrc-ide/recon_opt\n\nRecon opt","shortMessageHtmlLink":"Merge pull request #160 from mrc-ide/recon_opt"}},{"before":"26bc011c3f7c524147c5b690cb76a0f84ef3741f","after":"5e5091cb55aebfed5ceab167270751623f26bd72","ref":"refs/heads/recon_opt","pushedAt":"2023-06-27T10:06:56.312Z","pushType":"push","commitsCount":1,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"remove r from get_r_from_R","shortMessageHtmlLink":"remove r from get_r_from_R"}},{"before":"a3b096e14d06a5d3c7e9e38dc06cbfb865e0f150","after":"26bc011c3f7c524147c5b690cb76a0f84ef3741f","ref":"refs/heads/recon_opt","pushedAt":"2023-06-26T16:38:48.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"update v1 to v2","shortMessageHtmlLink":"update v1 to v2"}},{"before":"8d777a0e1b4961de190f6ad33154f3ba10362e7e","after":"a3b096e14d06a5d3c7e9e38dc06cbfb865e0f150","ref":"refs/heads/recon_opt","pushedAt":"2023-06-26T15:37:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"update main vignette","shortMessageHtmlLink":"update main vignette"}},{"before":"7bb9cb29d16e3540d9c41c9ef0d5c466b6af7359","after":"8d777a0e1b4961de190f6ad33154f3ba10362e7e","ref":"refs/heads/recon_opt","pushedAt":"2023-06-26T14:31:54.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"update documentation and vignettes","shortMessageHtmlLink":"update documentation and vignettes"}},{"before":"71b0d136a7fe9efc4fef89ab3853e286ab52c403","after":"7bb9cb29d16e3540d9c41c9ef0d5c466b6af7359","ref":"refs/heads/recon_opt","pushedAt":"2023-06-26T12:54:28.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"rebeccanash","name":null,"path":"/rebeccanash","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/48121535?s=80&v=4"},"commit":{"message":"Merge master changes\nMerge remote-tracking branch 'origin/master' into recon_opt","shortMessageHtmlLink":"Merge master changes"}},{"before":"2d26d104b74f46bae775212a2380678dfe3236ee","after":"4bff2f7ac09a990ab007c84da878edd6b48826a3","ref":"refs/heads/r0_correction","pushedAt":"2023-05-15T10:07:07.783Z","pushType":"push","commitsCount":2,"pusher":{"login":"abriz97","name":"Andrea Brizzi","path":"/abriz97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40828662?s=80&v=4"},"commit":{"message":"minor changes on vignette:\n\n- added CAVEATS + fixed typos + simplified one plot","shortMessageHtmlLink":"minor changes on vignette:"}},{"before":"4d1ff08d7967be4b90097096c57860518d21ca37","after":"2d26d104b74f46bae775212a2380678dfe3236ee","ref":"refs/heads/r0_correction","pushedAt":"2023-05-10T17:06:10.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"abriz97","name":"Andrea Brizzi","path":"/abriz97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40828662?s=80&v=4"},"commit":{"message":"[add] add vignette.","shortMessageHtmlLink":"[add] add vignette."}},{"before":"99aa9221bbbfd863a3d9edae7a41bb646d95f09a","after":"4d1ff08d7967be4b90097096c57860518d21ca37","ref":"refs/heads/r0_correction","pushedAt":"2023-05-08T16:50:34.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"abriz97","name":"Andrea Brizzi","path":"/abriz97","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/40828662?s=80&v=4"},"commit":{"message":"[add] first implementation of back-imputation.\n\nTried minimal changes:\n- modified `incid` as soon as possible in estimate_R.\n- modified the definition of T (ie the number of reports) to exclude\nimputed cases\n- did not change defs of t_start and t_end, but required to substitute\nto T_imputed + config$t_start often.","shortMessageHtmlLink":"[add] first implementation of back-imputation."}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEHg7--wA","startCursor":null,"endCursor":null}},"title":"Activity · mrc-ide/EpiEstim"}