nuin / beginning-python-for-bioinformatics fork watch download tarball
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Description: repository for the code featured in the blog
Homepage: http://python.genedrift.org
Clone URL: git://github.com/nuin/beginning-python-for-bioinformatics.git
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import sys
 
gbfile = open(sys.argv[1], 'r').readlines()
 
locus = ''
organism = ''
accession = ''
for line in gbfile:
    if line.find('LOCUS') >= 0:
        locus = line
    elif line.find('ACCESSION') >= 0:
        accession = line
    elif line.find('ORGANISM') >= 0:
        organism = line
 
print locus.strip()
print organism.strip()
print accession.strip()