omouse / dna-rna-amino
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Description: Conversion tool that turns DNA sequences into RNA sequences, and lists the amino acids in the RNA
Homepage: http://neverfriday.com/dna-rna-amino/
Clone URL: git://github.com/omouse/dna-rna-amino.git
dna-rna-amino / data.js
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/* data.js - part of the dna-rna-amino package
 * Licensed under the MIT license found in the file LICENSE
 * If the text of the license is not included, refer to this
 * website for the terms of the license:
 *   http://www.opensource.org/licenses/mit-license.php
 */
// The amino acids, their names and weights
function AminoAcid(abbreviation, name, atomicWeightRatio, molecularWeight,
		   kiloDaltonWeight, pK1, pK2, pL) {
  this.abbreviation = abbreviation;
  this.name = name;
  this.atomicWeightRatio = atomicWeightRatio;
  this.molecularWeight = molecularWeight;
  this.kiloDaltonWeight = kiloDaltonWeight;
  this.pK1 = pK1;
  this.pK2 = pK2;
  this.pL = pL;
};
 
// amino acids
aminos = new Object();
aminos["Ala"] = new AminoAcid("Ala / A", "Alanine", 0.000, 89.000,
			      0.08899992121239399, 2.34, 9.69, 6.01);
aminos["Arg"] = new AminoAcid("Arg / R", "Arginine", 0.650, 174.000,
			      0.17399984596580398, 2.17, 9.04, 10.76);
aminos["Asn"] = new AminoAcid("Asn / N", "Asparagine", 1.330, 132.000,
			      0.13199988314647199, 2.02, 8.80, 5.41);
aminos["Asp"] = new AminoAcid("Asp / D", "Aspartic Acid", 1.380, 133.000,
			      0.13299988226121798, 1.88, 9.60, 2.77);
aminos["Cys"] = new AminoAcid("Cys / C", "Cysteine", 2.750, 121.000,
			      0.12099989288426599, 1.96, 10.28, 5.07);
aminos["Gln"] = new AminoAcid("Gln / Q", "Glutamic Acid", 0.890, 146.000,
			      0.14599987075291598, 2.17, 9.13, 5.65);
aminos["Glu"] = new AminoAcid("Glu / E", "Gultamine", 0.920, 147.000,
			      0.14699986986766198, 2.19, 9.67, 3.22);
aminos["Gly"] = new AminoAcid("Gly / G", "Glycine", 0.740, 75.000,
			      0.07499993360594999, 2.34, 9.60, 5.67);
aminos["His"] = new AminoAcid("His / H", "Histidine", 0.580, 155.000,
			      0.15499986278563, 1.82, 9.17, 7.59);
aminos["Ile"] = new AminoAcid("Ile / I", "Isoleucine", 0.000, 131.000,
			      0.130999884031726, 2.36, 9.68, 6.02);
aminos["Leu"] = new AminoAcid("Leu / L", "Leucine", 0.000, 131.000,
			      0.130999884031726, 2.36, 9.60, 5.98);
aminos["Lys"] = new AminoAcid("Lys / K", "Lysine", 0.330, 146.000,
			      0.14599987075291598, 2.18, 8.95, 9.74);
aminos["Met"] = new AminoAcid("Met / M", "Methionine", 0.000, 149.000,
			      0.148999868097154, 2.28, 9.21, 5.74);
aminos["Phe"] = new AminoAcid("Phe / F", "Phenylalanine", 0.000, 165.000,
			      0.16499985393309, 1.83, 9.13, 5.48);
aminos["Pro"] = new AminoAcid("Pro / P", "Proline", 0.390, 115.000,
			      0.11499989819578998, 1.99, 10.96, 6.48);
aminos["Ser"] = new AminoAcid("Ser / S", "Serine", 1.420, 105.000,
			      0.10499990704833, 2.21, 9.15, 5.68);
aminos["Thr"] = new AminoAcid("Thr / T", "Threonine", 0.710, 119.000,
			      0.118999894654774, 2.11, 9.62, 5.87);
aminos["Trp"] = new AminoAcid("Trp / W", "Tryptophan", 0.130, 204.000,
			      0.20399981940818399, 2.38, 9.39, 5.89);
aminos["Tyr"] = new AminoAcid("Tyr / Y", "Tyrosine", 0.200, 181.000,
			      0.18099983976902598, 2.20, 9.11, 5.66);
aminos["Val"] = new AminoAcid("Val / V", "Valine", 0.000, 117.000,
			      0.116999896425282, 2.32, 9.62, 5.97);
 
aminos["Stop"] = new AminoAcid("", "Stop Codon");
 
// The amino acids that correspond to a given RNA sequence key
// aminoKeys["RNA"] = aminos["amino Acid Abbreviation"]
aminoKeys = new Object();
aminoKeys["UUU"] = aminos["Phe"];
aminoKeys["UUC"] = aminos["Phe"];
aminoKeys["UUA"] = aminos["Leu"];
aminoKeys["UUG"] = aminos["Leu"];
aminoKeys["UCU"] = aminos["Ser"];
aminoKeys["UCC"] = aminos["Ser"];
aminoKeys["UCA"] = aminos["Ser"];
aminoKeys["UCG"] = aminos["Ser"];
aminoKeys["UAU"] = aminos["Tyr"];
aminoKeys["UAC"] = aminos["Tyr"];
aminoKeys["UAA"] = aminos["Stop"];
aminoKeys["UAG"] = aminos["Stop"];
aminoKeys["UGC"] = aminos["cys"];
aminoKeys["UGU"] = aminos["Cys"];
aminoKeys["UGA"] = aminos["Stop"];
aminoKeys["UGG"] = aminos["Trp"];
aminoKeys["CUU"] = aminos["Leu"];
aminoKeys["CUC"] = aminos["Leu"];
aminoKeys["CUA"] = aminos["Leu"];
aminoKeys["CUG"] = aminos["Leu"];
aminoKeys["CCU"] = aminos["Pro"];
aminoKeys["CCC"] = aminos["Pro"];
aminoKeys["CCA"] = aminos["Pro"];
aminoKeys["CCG"] = aminos["Pro"];
aminoKeys["CAU"] = aminos["His"];
aminoKeys["CAC"] = aminos["His"];
aminoKeys["CAA"] = aminos["Gln"];
aminoKeys["CAG"] = aminos["Gln"];
aminoKeys["CGU"] = aminos["Arg"];
aminoKeys["CGA"] = aminos["Arg"];
aminoKeys["CGC"] = aminos["Arg"];
aminoKeys["CGG"] = aminos["Arg"];
aminoKeys["AUU"] = aminos["Lle"];
aminoKeys["AUC"] = aminos["Lle"];
aminoKeys["AUA"] = aminos["Lle"];
aminoKeys["AUG"] = aminos["Met"];
aminoKeys["ACU"] = aminos["Thr"];
aminoKeys["ACC"] = aminos["Thr"];
aminoKeys["ACA"] = aminos["The"];
aminoKeys["ACG"] = aminos["Thr"];
aminoKeys["AAU"] = aminos["Asn"];
aminoKeys["AAC"] = aminos["Asn"];
aminoKeys["AAA"] = aminos["Lys"];
aminoKeys["AAG"] = aminos["Lys"];
aminoKeys["AGU"] = aminos["Ser"];
aminoKeys["AGC"] = aminos["Ser"];
aminoKeys["AGA"] = aminos["Arg"];
aminoKeys["AGG"] = aminos["Arg"];
aminoKeys["GUU"] = aminos["Val"];
aminoKeys["GUC"] = aminos["Val"];
aminoKeys["GUA"] = aminos["Val"];
aminoKeys["GUG"] = aminos["Val"];
aminoKeys["GCU"] = aminos["Ala"];
aminoKeys["GCC"] = aminos["Ala"];
aminoKeys["GCA"] = aminos["Ala"];
aminoKeys["GCG"] = aminos["Ala"];
aminoKeys["GAU"] = aminos["Asp"];
aminoKeys["GAC"] = aminos["Asp"];
aminoKeys["GAA"] = aminos["Glu"];
aminoKeys["GAG"] = aminos["Glu"];
aminoKeys["GGU"] = aminos["Gly"];
aminoKeys["GGC"] = aminos["Gly"];
aminoKeys["GGA"] = aminos["Gly"];
aminoKeys["GGG"] = aminos["Gly"];