{"payload":{"pageCount":4,"repositories":[{"type":"Public","name":"c302","owner":"openworm","isFork":false,"description":"The c302 framework for generating multiscale network models of C. elegans","topicNames":["simulation","openworm"],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":15,"starsCount":87,"forksCount":19,"license":null,"participation":[0,6,0,0,0,1,1,7,0,0,0,0,0,0,0,0,0,2,0,8,0,0,0,1,0,0,5,0,3,1,1,1,5,0,0,0,0,0,26,17,21,20,6,1,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-02T16:29:19.270Z"}},{"type":"Public","name":"hodgkin_huxley_tutorial","owner":"openworm","isFork":false,"description":"A repository containing code for a number of tutorials on the Hodgkin Huxley model, including an interactive Jupyter notebook","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":32,"forksCount":11,"license":"GNU Lesser General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-02T12:23:51.596Z"}},{"type":"Public","name":"NicolettiEtAl2019_NeuronModels","owner":"openworm","isFork":true,"description":"Biophysical models of AWCon and RMD C. elegans neurons (M. Nicoletti at al. 2019)","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,2,0,1,0,0,0,0,0,0,0,0,0,2,0,0,0,1,0,0,6,5,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-01T09:38:53.013Z"}},{"type":"Public","name":"geppetto-client","owner":"openworm","isFork":false,"description":"The web client of a Geppetto application","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":29,"issueCount":70,"starsCount":4,"forksCount":2,"license":"Other","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-11T08:37:33.020Z"}},{"type":"Public","name":"org.geppetto.datasources","owner":"openworm","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":5,"issueCount":0,"starsCount":2,"forksCount":1,"license":"Other","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-03-15T10:56:29.471Z"}},{"type":"Public","name":"OpenWorm","owner":"openworm","isFork":false,"description":"Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues","topicNames":["simulation","biology","openworm","elegans"],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":45,"starsCount":2264,"forksCount":178,"license":"MIT License","participation":[0,0,0,0,0,1,0,0,0,0,0,0,0,4,0,0,0,0,1,0,0,0,0,3,1,0,6,11,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-27T14:33:48.901Z"}},{"type":"Public","name":"VarshneyEtAl2011","owner":"openworm","isFork":true,"description":"C. elegans connectome analysis","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":2,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-09T12:20:34.839Z"}},{"type":"Public","name":"wormneuroatlas","owner":"openworm","isFork":true,"description":"Neural signal propagation atlas (Randi et al.), genome (WormBase), single-cell transcriptome (Taylor et al.), neuropeptide/GPCR deorphanization (Beets et al.), monoaminergic connectome (Bentley et al.), and chemical-synapse sign predictions (Fenyves et al.) all in one place. Read the docs: <a href=\"https://francescorandi.github.io/wormneuroatlas/\" rel=\"nofollow\">https://francescorandi.github.io/wormneuroatlas/</a>","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":3,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-09T12:09:23.109Z"}},{"type":"Public","name":"bt-gsoc-2019","owner":"openworm","isFork":false,"description":"End to end process of the Framework including a BitTorrent Client, Access Control and Data Integrity checks.","topicNames":["bittorrent-client","torrents"],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":1,"starsCount":1,"forksCount":1,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-29T23:42:44.188Z"}},{"type":"Public","name":"sibernetic","owner":"openworm","isFork":false,"description":"This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":7,"issueCount":30,"starsCount":319,"forksCount":103,"license":"Other","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-26T12:51:20.826Z"}},{"type":"Public","name":"Connectomes","owner":"openworm","isFork":false,"description":"Information on published connectomics data related to C. elegans","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-12-19T12:00:21.602Z"}},{"type":"Public","name":"openworm.github.io","owner":"openworm","isFork":false,"description":"OpenWorm main website","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":15,"starsCount":20,"forksCount":34,"license":null,"participation":[0,0,0,0,0,0,0,5,1,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-21T16:05:55.621Z"}},{"type":"Public","name":"NeuroPAL","owner":"openworm","isFork":false,"description":"Scripts to analyse and convert NeuroPAL datasets","topicNames":["neuroscience","celegans","openworm","3d","neuroml"],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":0,"license":null,"participation":[0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-21T14:17:38.345Z"}},{"type":"Public","name":"owmeta","owner":"openworm","isFork":false,"description":"Unified, simple data access python library for data &amp; facts about C. elegans anatomy","topicNames":["metadata","rdf"],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":2,"issueCount":47,"starsCount":147,"forksCount":49,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-21T12:59:13.132Z"}},{"type":"Public","name":".github","owner":"openworm","isFork":false,"description":"The OpenWorm organisation template repository.","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":1,"forksCount":0,"license":null,"participation":[0,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,3,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-21T10:46:43.625Z"}},{"type":"Public","name":"JohnsonMailler_MuscleModel","owner":"openworm","isFork":false,"description":"C. elegans muscle model from Johnson &amp; Mailler 2015","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":3,"starsCount":2,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-21T10:43:52.867Z"}},{"type":"Public","name":"muscle_model","owner":"openworm","isFork":false,"description":"Model of C elegans body wall muscle based on Boyle &amp; Cohen 2008","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":17,"starsCount":46,"forksCount":24,"license":"Other","participation":[0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,1,0,0,0,0,0,0,0,0,4,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-16T09:18:23.460Z"}},{"type":"Public","name":"CelegansNeuromechanicalGaitModulation","owner":"openworm","isFork":true,"description":"C elegans Neuromechanical Gait Modulation Model ","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":1,"issueCount":0,"starsCount":1,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-21T16:05:12.173Z"}},{"type":"Public","name":"org.geppetto.frontend","owner":"openworm","isFork":false,"description":"Geppetto Java frontend bundle","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":4,"issueCount":2,"starsCount":29,"forksCount":25,"license":"Other","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-20T09:26:16.156Z"}},{"type":"Public","name":"openworm_docs","owner":"openworm","isFork":false,"description":"Documentation for OpenWorm, i.e. docs.openworm.org ","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":20,"starsCount":43,"forksCount":28,"license":null,"participation":[0,0,0,0,0,0,0,7,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-29T15:24:25.292Z"}},{"type":"Public","name":"org.geppetto.simulation","owner":"openworm","isFork":false,"description":"Generic simulation bundle for Geppetto","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":4,"issueCount":2,"starsCount":9,"forksCount":10,"license":"Other","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-29T09:56:05.633Z"}},{"type":"Public","name":"tracker-commons","owner":"openworm","isFork":false,"description":"Compilation of information and code bases related to open-source trackers for C. elegans","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Scala","color":"#c22d40"},"pullRequestCount":1,"issueCount":28,"starsCount":11,"forksCount":12,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-27T12:15:51.172Z"}},{"type":"Public","name":"CE_locomotion","owner":"openworm","isFork":true,"description":"Neuromechanical model of locomotion in C. elegans, originally developed by Eduardo Izquerdo, Erick Olivares and Randall Beer","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-12T11:31:28.474Z"}},{"type":"Public","name":"WormWorx","owner":"openworm","isFork":false,"description":"C. elegans simulator","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":1,"starsCount":7,"forksCount":3,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-03T03:24:06.861Z"}},{"type":"Public","name":"OpenWormData","owner":"openworm","isFork":false,"description":"","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"TeX","color":"#3D6117"},"pullRequestCount":1,"issueCount":0,"starsCount":3,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-02T04:58:01.878Z"}},{"type":"Public","name":"owmeta-core","owner":"openworm","isFork":false,"description":"Core library for owmeta","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":41,"starsCount":3,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-02T04:55:36.027Z"}},{"type":"Public","name":"org.geppetto.core","owner":"openworm","isFork":false,"description":"Geppetto core bundle","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":7,"issueCount":6,"starsCount":23,"forksCount":13,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-31T14:06:22.464Z"}},{"type":"Public","name":"pygeppetto","owner":"openworm","isFork":false,"description":"Python Library to create, load, edit and save a Geppetto Model","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":4,"starsCount":14,"forksCount":3,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-22T23:20:15.762Z"}},{"type":"Public","name":"owmeta-bundles","owner":"openworm","isFork":false,"description":"Bundles for owmeta","topicNames":[],"topicsNotShown":0,"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-19T07:41:09.643Z"}},{"type":"Public","name":"Blender2NeuroML","owner":"openworm","isFork":false,"description":"Conversion script to bring neuron models created in Blender into NeuroML format","topicNames":[],"topicsNotShown":0,"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":2,"starsCount":17,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-16T15:56:10.861Z"}}],"repositoryCount":93,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"mirror","text":"Mirrors"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}