Cassiopee is a Ruby module to search string with exact match or an allowed distance in an other string (or file). An index can optionally be saved for further searches. Exact or approximate search is used in many fields among which bioinformatics to search some patterns in DNA/RNA sequences.The software works on small or large sequences.
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osallou/cassiopee
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Search an exact or approximate word (hamming or edit distance) in a string. Support index cache with incremental update for later searches
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Cassiopee is a Ruby module to search string with exact match or an allowed distance in an other string (or file). An index can optionally be saved for further searches. Exact or approximate search is used in many fields among which bioinformatics to search some patterns in DNA/RNA sequences.The software works on small or large sequences.
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