<?xml version="1.0" encoding="UTF-8"?>
<project name="MX" default="compile" basedir=".">
  <!-- properties -->
  <property name="full-name" value="MX Tools for Cheminformatics" />
  <property name="unix-name" value="mx" />
  <property name="version" value="1.0-beta1" />
  <property name="source.dir" location="src" />
  <property name="resource.dir" location="resources" />
  <property name="lib.dir" location="lib" />
  <property name="build.dir" location="build" />
  <property name="class.dir" location="${build.dir}/classes" />
  <property name="jar.dir" location="${build.dir}/jar" />
  <property name="tgz.dir" location="${build.dir}/tgz" />
  <property name="doc.dir" location="${build.dir}/doc" />
  <property name="dist.dir" location="${build.dir}/dist" />
  <property name="test.dir" location="${build.dir}/test" />
  <property name="lib-licenses.file" location="${lib.dir}/LICENSES.txt" />
  <property name="license.file" location="LICENSE.txt" />
  <property name="junit.lib" value="${lib.dir}/junit-4.5.jar" />
  <property name="test.class" value = "com.metamolecular.mx.test.MXTest" />
  <!-- filesets -->
  <fileset dir="${lib.dir}" id="libs">
    <include name="**/*.jar" />
  </fileset>
  <!-- targets -->
  <target name="init" description="Create build directories." >
    <mkdir dir="${build.dir}" />
    <mkdir dir="${class.dir}" />
    <mkdir dir="${jar.dir}" />
    <mkdir dir="${doc.dir}" />
    <mkdir dir="${tgz.dir}" />
    <mkdir dir="${test.dir}" />
  </target>
  <target name="clean" description="Remove build directories.">
    <delete dir="${build.dir}" />
    <delete dir="${doc.dir}" />
  </target>
  <target name="compile" depends="init" description="Compile sources.">
    <javac srcdir="${source.dir}" destdir="${class.dir}" includes="com/metamolecular/mx/**/*.java" debug="on" source="1.5" target="1.5">
      <classpath>
        <fileset refid="libs" />
      </classpath>
    </javac>
    <copy file="${resource.dir}/atomic_system.xml" todir="${class.dir}/com/metamolecular/mx/model" />
  </target>
  <target name="test" depends="compile" description="Run JUnit tests.">
    <java classname="${test.class}" fork = "true" dir="${build.dir}">
      <classpath>
        <pathelement path="${class.dir}" />
        <fileset refid="libs" />
      </classpath>
    </java>
  </target>
  <target name="doc" depends="compile" description="Create Java Doc.">
    <javadoc sourcepath="${source.dir}" packagenames="*" destdir="${doc.dir}" windowtitle="${full-name} API" excludepackagenames="com.metamolecular.mx.test">
      <doctitle>${full-name} v${version}</doctitle>
      <header>${full-name} v${version}</header>
      <classpath>
        <fileset refid="libs" />
      </classpath>
      <bottom><![CDATA[<i>Copyright &copy; 2007, 2008 <a href="http://metamolecular.com">Metamolecular, LLC</a>. All Rights Reserved.</i>]]>
      </bottom>
    </javadoc>
  </target>
  <target name="jar" depends="compile" description="Create the jarfile.">
    <jar jarfile="${jar.dir}/${unix-name}-${version}.jar" basedir="${class.dir}" excludes="com/metamolecular/mx/test/**" >
    </jar>
  </target>
  <target name="dist" depends="init,compile,doc" description="Create the source distribution.">
    <mkdir dir="${dist.dir}/lib" />
    <mkdir dir="${dist.dir}/src" />
    <mkdir dir="${dist.dir}/doc" />
    <mkdir dir="${dist.dir}/resources" />
    <copy file="${junit.lib}" todir="${dist.dir}/lib" />
    <copy file="${lib-licenses.file}" todir="${dist.dir}/lib" />
    <copy file="${license.file}" todir="${dist.dir}" />
    <copy todir="${dist.dir}/src">
      <fileset dir="${source.dir}" includes="com/metamolecular/mx/**/*.java" />
    </copy>
    <copy todir="${dist.dir}/doc">
      <fileset dir="${doc.dir}" />
    </copy>
    <copy file="${resource.dir}/atomic_system.pdf" todir="${dist.dir}/resources" />
    <copy file="${resource.dir}/atomic_system.xml" todir="${dist.dir}/resources" />
    <copy file="${resource.dir}/pubchem_sample_33.sdf" todir="${dist.dir}/resources" />
    <copy file="build.xml" todir="${dist.dir}" />
  </target>
  <target name="tgz" depends="dist" description="Create a compressed distribution tarfile.">
    <tar destfile="${tgz.dir}/${unix-name}-${version}-src.tar.gz" compression="gzip">
      <tarfileset dir="${dist.dir}" prefix="${unix-name}-${version}-src">
      </tarfileset>
    </tar>
  </target>
</project>