/*
* MX Cheminformatics Tools for Java
*
* Copyright (c) 2007-2009 Metamolecular, LLC
*
* http://metamolecular.com
*
* Permission is hereby granted, free of charge, to any person obtaining a copy
* of this software and associated documentation files (the "Software"), to deal
* in the Software without restriction, including without limitation the rights
* to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
* copies of the Software, and to permit persons to whom the Software is
* furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included in
* all copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
* IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
* FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
* AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
* LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
* OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
* THE SOFTWARE.
*/
package com.metamolecular.mx.test;
import com.metamolecular.mx.model.Atom;
import com.metamolecular.mx.model.Bond;
import com.metamolecular.mx.walk.Step;
import com.metamolecular.mx.walk.DefaultWalker;
import com.metamolecular.mx.walk.Reporter;
import java.util.List;
import junit.framework.TestCase;
import static org.mockito.Mockito.*;
/**
* @author Richard L. Apodaca <rapodaca at metamolecular.com>
*/
public class DefaultWalkerTest extends TestCase
{
private DefaultWalker walker;
private Reporter reporter;
private Step step;
private List path;
private Atom atom;
private Bond bond;
@Override
protected void setUp() throws Exception
{
walker = new DefaultWalker();
reporter = mock(Reporter.class);
step = mock(Step.class);
path = mock(List.class);
atom = mock(Atom.class);
bond = mock(Bond.class);
when(step.getPath()).thenReturn(path);
when(step.getAtom()).thenReturn(atom);
}
public void testItSetsMaximumDepth()
{
walker.setMaximumDepth(5);
assertEquals(5, walker.getMaximumDepth());
}
public void testItDoesntRequestNextBondWhenMaximumDepthReached()
{
walker.setMaximumDepth(2);
when(path.size()).thenReturn(2);
doStep();
verify(step, never()).nextBond();
}
public void testItRequestsNextBondWhenMaximumDepthNotReached()
{
Step branch1 = mock(Step.class);
walker.setMaximumDepth(2);
when(path.size()).thenReturn(1);
when(step.hasNextBond()).thenReturn(true, false);
when(step.nextBond()).thenReturn(bond);
when(step.nextStep(bond)).thenReturn(branch1);
doStep();
verify(step, times(1)).nextBond();
}
public void testItRequestsNextBondWhenMaximumDepthNotSet()
{
Step branch1 = mock(Step.class);
walker.setMaximumDepth(0);
when(path.size()).thenReturn(2);
when(step.hasNextBond()).thenReturn(true, false);
when(step.nextBond()).thenReturn(bond);
when(branch1.getAtom()).thenReturn(atom);
when(step.nextStep(bond)).thenReturn(branch1);
doStep();
verify(step, times(1)).nextBond();
}
public void testItDoesntCheckPathDepthWhenNotSet()
{
doStep();
verify(path, never()).size();
}
public void testItReportsAtomWhenNextBondUnavailable()
{
doStep();
verify(reporter, times(1)).atomFound(atom);
}
public void testItReporstNoBranchStartWhenStepHasOneBond()
{
Step branch1 = mock(Step.class);
when(step.hasNextBond()).thenReturn(true, false);
when(step.nextBond()).thenReturn(bond);
when(branch1.getAtom()).thenReturn(atom);
when(step.nextStep(any(Bond.class))).thenReturn(branch1);
doStep();
verify(reporter, times(0)).branchStart();
}
public void testItReportsNoBranchEndWhenStepHasOneBond()
{
Step branch1 = mock(Step.class);
when(step.hasNextBond()).thenReturn(true, false);
when(step.nextBond()).thenReturn(bond);
when(branch1.getAtom()).thenReturn(atom);
when(step.nextStep(any(Bond.class))).thenReturn(branch1);
doStep();
verify(reporter, times(0)).branchEnd();
}
public void testItReportsTwoBranchStartsWhenStepHasThreeBonds()
{
when(step.hasNextBond()).thenReturn(true, true, true, false);
when(step.nextBond()).thenReturn(bond);
Step branch1 = mock(Step.class);
Step branch2 = mock(Step.class);
Step branch3 = mock(Step.class);
when(branch1.getAtom()).thenReturn(atom);
when(branch2.getAtom()).thenReturn(atom);
when(branch3.getAtom()).thenReturn(atom);
when(step.nextStep(any(Bond.class))).thenReturn(branch1, branch2, branch3);
doStep();
verify(reporter, times(2)).branchStart();
}
public void testItReportsTwoBranchEndsWhenStepHasThreeBonds()
{
when(step.hasNextBond()).thenReturn(true, true, true, false);
when(step.nextBond()).thenReturn(bond);
Step branch1 = mock(Step.class);
Step branch2 = mock(Step.class);
Step branch3 = mock(Step.class);
when(branch1.getAtom()).thenReturn(atom);
when(branch2.getAtom()).thenReturn(atom);
when(branch3.getAtom()).thenReturn(atom);
when(step.nextStep(any(Bond.class))).thenReturn(branch1, branch2, branch3);
doStep();
verify(reporter, times(2)).branchEnd();
}
public void testItReportsRingClosureWhenStepNextBondClosesRing()
{
when(step.hasNextBond()).thenReturn(true, false);
when(step.nextBond()).thenReturn(bond);
Step branch1 = mock(Step.class);
when(branch1.getAtom()).thenReturn(atom);
when(step.nextStep(bond)).thenReturn(branch1);
when(step.closesRingWith(bond)).thenReturn(true);
doStep();
verify(reporter, times(1)).ringClosed(bond);
}
public void testItDoesntReportRingClosureWhenStepNextBondDoesntCloseRing()
{
when(step.hasNextBond()).thenReturn(true, false);
when(step.nextBond()).thenReturn(bond);
Step branch1 = mock(Step.class);
when(branch1.getAtom()).thenReturn(atom);
when(step.nextStep(bond)).thenReturn(branch1);
when(step.closesRingWith(bond)).thenReturn(false);
doStep();
verify(reporter, never()).ringClosed(bond);
}
private void doStep()
{
walker.step(step, reporter);
}
}