@@ -23,6 +23,7 @@ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ + package com.metamolecular.mx.map; import com.metamolecular.mx.model.Atom; src/com/metamolecular/mx/map/DefaultMapper.java @@ -23,6 +23,7 @@ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ + package com.metamolecular.mx.map; import com.metamolecular.mx.model.Atom; src/com/metamolecular/mx/map/DefaultState.java @@ -26,6 +26,9 @@ package com.metamolecular.mx.model; +/** + * @author Richard L. Apodaca + */ public interface Atom { public String getSymbol(); src/com/metamolecular/mx/model/Atom.java @@ -26,6 +26,9 @@ package com.metamolecular.mx.model; +/** + * @author Richard L. Apodaca + */ public interface Bond { public int getIndex(); src/com/metamolecular/mx/model/Bond.java @@ -28,6 +28,9 @@ package com.metamolecular.mx.model; import javax.swing.event.ChangeListener; +/** + * @author Richard L. Apodaca + */ public interface Molecule { public int countAtoms(); src/com/metamolecular/mx/model/Molecule.java @@ -1,7 +1,29 @@ /* - * To change this template, choose Tools | Templates - * and open the template in the editor. + * MX Cheminformatics Tools for Java + * + * Copyright (c) 2007, 2008 Metamolecular, LLC + * + * http://metamolecular.com + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in + * all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + * THE SOFTWARE. */ + package com.metamolecular.mx.path; import com.metamolecular.mx.model.Atom; src/com/metamolecular/mx/path/DefaultStep.java @@ -1,7 +1,29 @@ /* - * To change this template, choose Tools | Templates - * and open the template in the editor. + * MX Cheminformatics Tools for Java + * + * Copyright (c) 2007, 2008 Metamolecular, LLC + * + * http://metamolecular.com + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in + * all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + * THE SOFTWARE. */ + package com.metamolecular.mx.path; import com.metamolecular.mx.model.Atom; @@ -9,8 +31,7 @@ import java.util.ArrayList; import java.util.List; /** - * - * @author rich + * @author Richard L. Apodaca */ public class PathFinder { src/com/metamolecular/mx/path/PathFinder.java @@ -1,7 +1,29 @@ /* - * To change this template, choose Tools | Templates - * and open the template in the editor. + * MX Cheminformatics Tools for Java + * + * Copyright (c) 2007, 2008 Metamolecular, LLC + * + * http://metamolecular.com + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in + * all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + * THE SOFTWARE. */ + package com.metamolecular.mx.path; import com.metamolecular.mx.model.Atom; @@ -9,8 +31,7 @@ import java.util.List; import java.util.Set; /** - * - * @author rich + * @author Richard L. Apodaca */ public interface Step { src/com/metamolecular/mx/path/Step.java @@ -34,7 +34,6 @@ import javax.swing.event.ChangeListener; import junit.framework.TestCase; /** - * * @author Richard L. Apodaca */ public class AtomTest extends TestCase src/com/metamolecular/mx/test/AtomTest.java @@ -30,7 +30,6 @@ import junit.framework.TestSuite; import junit.textui.TestRunner; /** - * * @author Richard L. Apodaca */ public class MXTest src/com/metamolecular/mx/test/MXTest.java @@ -23,6 +23,7 @@ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ + package com.metamolecular.mx.test; import com.metamolecular.mx.io.Molecules; src/com/metamolecular/mx/test/MapperTest.java @@ -1,7 +1,29 @@ /* - * To change this template, choose Tools | Templates - * and open the template in the editor. + * MX Cheminformatics Tools for Java + * + * Copyright (c) 2007, 2008 Metamolecular, LLC + * + * http://metamolecular.com + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in + * all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + * THE SOFTWARE. */ + package com.metamolecular.mx.test; import com.metamolecular.mx.io.MolfileReader; @@ -11,8 +33,7 @@ import com.metamolecular.mx.model.Molecule; import junit.framework.TestCase; /** - * - * @author rich + * @author Richard L. Apodaca */ public class MolfileReaderTest extends TestCase { src/com/metamolecular/mx/test/MolfileReaderTest.java @@ -1,7 +1,29 @@ /* - * To change this template, choose Tools | Templates - * and open the template in the editor. + * MX Cheminformatics Tools for Java + * + * Copyright (c) 2007, 2008 Metamolecular, LLC + * + * http://metamolecular.com + * + * Permission is hereby granted, free of charge, to any person obtaining a copy + * of this software and associated documentation files (the "Software"), to deal + * in the Software without restriction, including without limitation the rights + * to use, copy, modify, merge, publish, distribute, sublicense, and/or sell + * copies of the Software, and to permit persons to whom the Software is + * furnished to do so, subject to the following conditions: + * + * The above copyright notice and this permission notice shall be included in + * all copies or substantial portions of the Software. + * + * THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR + * IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, + * FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE + * AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER + * LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, + * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN + * THE SOFTWARE. */ + package com.metamolecular.mx.test; import com.metamolecular.mx.io.Molecules; @@ -13,8 +35,7 @@ import java.util.List; import junit.framework.TestCase; /** - * - * @author rich + * @author Richard L. Apodaca */ public class PathFinderTest extends TestCase { src/com/metamolecular/mx/test/PathFinderTest.java @@ -23,6 +23,7 @@ * OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN * THE SOFTWARE. */ + package com.metamolecular.mx.test; import com.metamolecular.mx.io.Molecules; src/com/metamolecular/mx/test/StateTest.java ae2f4e4de0084c62e00780bdbfbfa30c4c9384d8 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/4bd8155c86ece7efe238ddad4a8824bb3fcff3d2 4bd8155c86ece7efe238ddad4a8824bb3fcff3d2 2008-11-25T17:59:10-08:00 2008-11-25T17:59:10-08:00 updated author tags and copyright notices efced92d975b83f2218fc82e2982b4c3eb1fc789 Rich Apodaca rapodaca@metamolecular.com