46f5b5ca183f7eee34a18ac1e3f66ade63743a08 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/930bdff5b2da3310c49dc6f146916d8f2ca5c577 930bdff5b2da3310c49dc6f146916d8f2ca5c577 2009-02-27T23:00:20-08:00 2009-02-27T23:00:20-08:00 more test cases f36428c925a9efdf1be82c9415e46822e976e311 Rich Apodaca rapodaca@metamolecular.com 190f0a6d6979c0b2a19adf6c5ded85d764ed15c7 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/46f5b5ca183f7eee34a18ac1e3f66ade63743a08 46f5b5ca183f7eee34a18ac1e3f66ade63743a08 2009-02-25T18:46:20-08:00 2009-02-25T18:46:20-08:00 added test/impl for defaultstate 52778849187b9f0d42730119003c3ddfbfbfbbb1 Rich Apodaca rapodaca@metamolecular.com 322afb4e22ed6d969241082d0f3e8543a5a0f686 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/190f0a6d6979c0b2a19adf6c5ded85d764ed15c7 190f0a6d6979c0b2a19adf6c5ded85d764ed15c7 2009-02-25T17:40:45-08:00 2009-02-25T17:40:45-08:00 more state tests 756cd0857fb69f7242cb5f43dc74c4c6c731498e Rich Apodaca rapodaca@metamolecular.com 939e82a2d93b5f74e60e8f812efc7af864c04989 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/322afb4e22ed6d969241082d0f3e8543a5a0f686 322afb4e22ed6d969241082d0f3e8543a5a0f686 2009-02-25T16:56:15-08:00 2009-02-25T16:56:15-08:00 state test/impl df777d0efc4ad07f534cad4ce3364f06a6b4149b Rich Apodaca rapodaca@metamolecular.com bd998e88d078603bc3dd4121ba8d90151c9c7c24 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/939e82a2d93b5f74e60e8f812efc7af864c04989 939e82a2d93b5f74e60e8f812efc7af864c04989 2009-02-24T19:19:09-08:00 2009-02-24T19:19:09-08:00 first state test cc79f241235c9baff7fe1005c6eb32281d38a03e Rich Apodaca rapodaca@metamolecular.com 29da4281b113118a3faa6039a6d59b118713ad3a Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/bd998e88d078603bc3dd4121ba8d90151c9c7c24 bd998e88d078603bc3dd4121ba8d90151c9c7c24 2009-02-21T22:19:55-08:00 2009-02-21T22:19:55-08:00 more template query tests 85ae1680fa4c06bdc93ff2c569cad04b6519cd8d Rich Apodaca rapodaca@metamolecular.com d2a970d5e7f57ce47337b2c5ea93b818a44c7164 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/29da4281b113118a3faa6039a6d59b118713ad3a 29da4281b113118a3faa6039a6d59b118713ad3a 2009-02-21T22:03:33-08:00 2009-02-21T22:03:33-08:00 added defaultquery constructor taking molecule argument 91166f90e103f3b380a79c04150aa2b0534c5ba8 Rich Apodaca rapodaca@metamolecular.com eccabb0d5396bf5a154b700a5e9bd12631096931 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/d2a970d5e7f57ce47337b2c5ea93b818a44c7164 d2a970d5e7f57ce47337b2c5ea93b818a44c7164 2009-02-21T18:21:02-08:00 2009-02-21T18:21:02-08:00 template atom matcher 81dbe89531d86fe42ca001e9eeb6b8bc94f6242b Rich Apodaca rapodaca@metamolecular.com e23ce7eb3915a394c95c3292af866c9dcec1065c Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/eccabb0d5396bf5a154b700a5e9bd12631096931 eccabb0d5396bf5a154b700a5e9bd12631096931 2009-02-21T18:16:55-08:00 2009-02-21T18:16:55-08:00 template atom matcher 3800a0a2bc0ad110c60e7403462133ee9c7b6210 Rich Apodaca rapodaca@metamolecular.com 76376b710a74e07c2c4821a01123a74a75fe15ec Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/e23ce7eb3915a394c95c3292af866c9dcec1065c e23ce7eb3915a394c95c3292af866c9dcec1065c 2009-02-21T17:45:53-08:00 2009-02-21T17:45:53-08:00 added edge d07b4b1ac7bdfe211cb3a834db99e50769621df0 Rich Apodaca rapodaca@metamolecular.com 751fb976abc28ef505fd4076505cbe99c0580bc2 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/76376b710a74e07c2c4821a01123a74a75fe15ec 76376b710a74e07c2c4821a01123a74a75fe15ec 2009-02-21T15:47:50-08:00 2009-02-21T15:47:50-08:00 updated copyright notices, added iterator 63d3d0252877147360d00060fb754ef4c99f9733 Rich Apodaca rapodaca@metamolecular.com e3790eff4b20bad90ef76ea6520ba696fcb51326 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/751fb976abc28ef505fd4076505cbe99c0580bc2 751fb976abc28ef505fd4076505cbe99c0580bc2 2009-02-21T15:22:03-08:00 2009-02-21T15:22:03-08:00 removed edge until its clear that its needed 5d3bea06ad095ac1cbfd9ebf026eaacf495cefc3 Rich Apodaca rapodaca@metamolecular.com 71e2c3f0e3ce6f474dcecc7e5156824e21a6de13 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/e3790eff4b20bad90ef76ea6520ba696fcb51326 e3790eff4b20bad90ef76ea6520ba696fcb51326 2009-02-21T15:20:48-08:00 2009-02-21T15:20:48-08:00 initial tests/impl for node 9a9bb8579ec2345fcd45a2447b5893ea1dd9617c Rich Apodaca rapodaca@metamolecular.com 039a8cd74ca4fc6cf9bedec01325cbd11c110720 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/71e2c3f0e3ce6f474dcecc7e5156824e21a6de13 71e2c3f0e3ce6f474dcecc7e5156824e21a6de13 2009-02-21T14:33:34-08:00 2009-02-21T14:33:34-08:00 added initial test/impl for query package 213448aafdd24abfa118104cd47f7c7cf892de31 Rich Apodaca rapodaca@metamolecular.com ba2665d1e9ce832777deed9ad9a0b0e6c90f70e7 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/039a8cd74ca4fc6cf9bedec01325cbd11c110720 039a8cd74ca4fc6cf9bedec01325cbd11c110720 2009-02-21T12:26:08-08:00 2009-02-21T12:26:08-08:00 updated copyright notice 3aa10ec2c4302c46902f07eb9057ef7f017c0dde Rich Apodaca rapodaca@metamolecular.com 93741be2842f1129df263d61fe94848c4ab246bd Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/ba2665d1e9ce832777deed9ad9a0b0e6c90f70e7 ba2665d1e9ce832777deed9ad9a0b0e6c90f70e7 2009-01-08T09:35:16-08:00 2009-01-08T09:35:16-08:00 patch++ 2c9ffc641ac8d06e39d94b900d128dced04e7258 Rich Apodaca rapodaca@metamolecular.com b57fd271630366306c74f80b7280f7a7c5d4bdb6 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/93741be2842f1129df263d61fe94848c4ab246bd 93741be2842f1129df263d61fe94848c4ab246bd 2009-01-08T09:32:19-08:00 2009-01-08T09:32:19-08:00 fixed build.xml so that dist package can compile and run all tests d6e4cf36de922ac809bdba694017cd1cdd8e3d60 Rich Apodaca rapodaca@metamolecular.com d9c56a91863e5cdd55025b45253d9caa9656b08f e5b91f327316815567fb5cb33bb1d302d0fb5980 Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/b57fd271630366306c74f80b7280f7a7c5d4bdb6 b57fd271630366306c74f80b7280f7a7c5d4bdb6 2009-01-08T07:45:19-08:00 2009-01-08T07:45:19-08:00 merged branch cycle, fixed MXTest conflict by accepting all changes f0bbc780a4da84004a108042b587cf86b987dcdd Richard Apodaca rapodaca@metamolecular.com 53161e7d5312b66327c883716b89e1d08bc05e21 Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/e5b91f327316815567fb5cb33bb1d302d0fb5980 e5b91f327316815567fb5cb33bb1d302d0fb5980 2009-01-08T00:34:57-08:00 2009-01-08T00:34:57-08:00 test/impl of hanserringfinder 90b43741118ed6c02313049a2942558ef5ddef9d Richard Apodaca rapodaca@metamolecular.com 092572d10ad06f2e21463fc7c9e1447540b78610 Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/53161e7d5312b66327c883716b89e1d08bc05e21 53161e7d5312b66327c883716b89e1d08bc05e21 2009-01-08T00:12:11-08:00 2009-01-08T00:12:11-08:00 removed commented out code a35b35f930701b3f2c6a8da7ccceded864dd658e Richard Apodaca rapodaca@metamolecular.com 42c9541d6f74fff495b5ac481bc1fe9ffe995476 Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/092572d10ad06f2e21463fc7c9e1447540b78610 092572d10ad06f2e21463fc7c9e1447540b78610 2009-01-08T00:10:00-08:00 2009-01-08T00:10:00-08:00 all rings in cubane are now detected bbdcfebe22f948411931b03ec48cad885a499a1b Richard Apodaca rapodaca@metamolecular.com 0793d65b660f6447201f4839f11bc412a8a32eb1 Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/42c9541d6f74fff495b5ac481bc1fe9ffe995476 42c9541d6f74fff495b5ac481bc1fe9ffe995476 2009-01-07T23:58:38-08:00 2009-01-07T23:58:38-08:00 commented out printlns 5c0505dfc810bbda9810e9200451e8a5392cef95 Richard Apodaca rapodaca@metamolecular.com 1b3a3de031c2f48710ef163762b1a55c2fd35647 Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/0793d65b660f6447201f4839f11bc412a8a32eb1 0793d65b660f6447201f4839f11bc412a8a32eb1 2009-01-07T23:38:46-08:00 2009-01-07T23:38:46-08:00 messy println output, but problem pinpointed 0ce99e74de771c6cae28a2c23d6ef0ca7179452e Richard Apodaca rapodaca@metamolecular.com 850e33a44b719381c33b422263a08a1a172d0fcf 2d18eadf5cc274bd7456ddfe3e5b4ae06ba3389b Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/d9c56a91863e5cdd55025b45253d9caa9656b08f d9c56a91863e5cdd55025b45253d9caa9656b08f 2009-01-05T21:37:41-08:00 2009-01-05T21:37:41-08:00 Merge branch 'master' of git@github.com:rapodaca/mx * 'master' of git@github.com:rapodaca/mx: minor++ code formatting 94627219ae60faae396893349396574a42b2451e Richard Apodaca rapodaca@metamolecular.com 7a1acdbc239fd37fbef14cafbe0de2066124d390 Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/850e33a44b719381c33b422263a08a1a172d0fcf 850e33a44b719381c33b422263a08a1a172d0fcf 2009-01-05T21:34:09-08:00 2009-01-05T21:34:09-08:00 test/impl of reading multiline data in sd file b0b4129c8f889503004458b52c6ed390ae9f5cb8 Richard Apodaca rapodaca@metamolecular.com d47d2c791aa8faa62b7a5b41200a404846e0e079 Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/1b3a3de031c2f48710ef163762b1a55c2fd35647 1b3a3de031c2f48710ef163762b1a55c2fd35647 2009-01-04T21:59:24-08:00 2009-01-04T21:59:24-08:00 failing test to find all cubane cycles d23140a444e1355edfd0b4263615d46749a06818 Richard Apodaca rapodaca@metamolecular.com a24d7c7d8621a2ea0b289e057844f865e9754e5e Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/d47d2c791aa8faa62b7a5b41200a404846e0e079 d47d2c791aa8faa62b7a5b41200a404846e0e079 2008-12-18T23:25:27-08:00 2008-12-18T23:25:27-08:00 test for fused ring system collapse - needed to prevent addition of non-real path 8de9e103fde7edf688dfdd6625d3a6653c39c643 Richard Apodaca rapodaca@metamolecular.com 55615e31fb5bcfc61d47e8bf80e94a777d1bab54 Rich Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/2d18eadf5cc274bd7456ddfe3e5b4ae06ba3389b 2d18eadf5cc274bd7456ddfe3e5b4ae06ba3389b 2008-12-18T15:40:00-08:00 2008-12-18T15:40:00-08:00 minor++ a2e35df445a720647954d8c12e01b54164856ea2 Rich Apodaca rapodaca@metamolecular.com 6bf6bd2caec65cf6dc30b1264115478ff8d6f42c Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/a24d7c7d8621a2ea0b289e057844f865e9754e5e a24d7c7d8621a2ea0b289e057844f865e9754e5e 2008-12-18T01:54:00-08:00 2008-12-18T01:54:00-08:00 first working path collapse 79421056c66c55aed8f6f6a3e593a8b1340cbb4c Richard Apodaca rapodaca@metamolecular.com 692269bf8331bd6ca68e6383b58ad5712f6dab7f Richard Apodaca rapodaca@metamolecular.com http://github.com/rapodaca/mx/commit/6bf6bd2caec65cf6dc30b1264115478ff8d6f42c 6bf6bd2caec65cf6dc30b1264115478ff8d6f42c 2008-12-17T23:44:29-08:00 2008-12-17T23:44:29-08:00 test for pathedge cycle ed7875cd7e4ec135c0f0bed1895d6a1c2b4af956 Richard Apodaca rapodaca@metamolecular.com