{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":12333026,"defaultBranch":"develop","name":"pmi","ownerLogin":"salilab","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2013-08-23T21:26:44.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/1877957?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1609812924.0","currentOid":""},"activityList":{"items":[{"before":"bc6ab67368d229bea4a66ef1cba86930bbd0448a","after":"198598f5c85a35bb01ccd0798d22f25456fe4008","ref":"refs/heads/develop","pushedAt":"2024-06-05T22:28:13.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Remove Python 2 workaround for TestCase.assertWarns","shortMessageHtmlLink":"Remove Python 2 workaround for TestCase.assertWarns"}},{"before":"f7bcfd722deaaa309bc24434f67f2765fd29d6f5","after":"bc6ab67368d229bea4a66ef1cba86930bbd0448a","ref":"refs/heads/develop","pushedAt":"2024-06-04T17:40:40.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Drop Python 2 compatibility","shortMessageHtmlLink":"Drop Python 2 compatibility"}},{"before":"64d251d89f6c9aaf585f43bfe37bd94d70be8d62","after":"f7bcfd722deaaa309bc24434f67f2765fd29d6f5","ref":"refs/heads/develop","pushedAt":"2024-06-03T22:12:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"flake8 fixes","shortMessageHtmlLink":"flake8 fixes"}},{"before":"2c9672c53ee87cb1ee1c5a6f63acc82e64433828","after":"64d251d89f6c9aaf585f43bfe37bd94d70be8d62","ref":"refs/heads/develop","pushedAt":"2024-06-03T22:08:00.000Z","pushType":"push","commitsCount":4,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Drop Python 2 compatibility code","shortMessageHtmlLink":"Drop Python 2 compatibility code"}},{"before":"317d9ff43e435d74b1ebdf5794a648d243fe9ad9","after":"0edd43de397e51492bf7062611cc2356f837a97c","ref":"refs/heads/legacy-pmi1","pushedAt":"2024-05-24T22:54:53.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Don't use deprecated boost::uniform_real","shortMessageHtmlLink":"Don't use deprecated boost::uniform_real"}},{"before":"26c9da6a01b10318c9c4ed97ee1aebd57dc4a4e0","after":"2c9672c53ee87cb1ee1c5a6f63acc82e64433828","ref":"refs/heads/develop","pushedAt":"2024-05-24T22:50:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Don't use deprecated boost::uniform_real","shortMessageHtmlLink":"Don't use deprecated boost::uniform_real"}},{"before":"a3f39aa1190f286bf131f7fb6e225570e7e7e251","after":"26c9da6a01b10318c9c4ed97ee1aebd57dc4a4e0","ref":"refs/heads/develop","pushedAt":"2024-03-20T16:15:42.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Remove unused imports","shortMessageHtmlLink":"Remove unused imports"}},{"before":"bf1b9330915e7093a480cdf25a6dcd5836976262","after":"a3f39aa1190f286bf131f7fb6e225570e7e7e251","ref":"refs/heads/develop","pushedAt":"2024-03-15T19:03:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Fix flake8 issues","shortMessageHtmlLink":"Fix flake8 issues"}},{"before":"422beda4d05c6954d10b60aa15ee9dc7ec8e6754","after":"bf1b9330915e7093a480cdf25a6dcd5836976262","ref":"refs/heads/develop","pushedAt":"2024-03-15T19:00:27.000Z","pushType":"pr_merge","commitsCount":9,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Merge pull request #263 from isblab/develop\n\nAdditions to EM and crosslinking restraints. Minor modifications in ReplicaExchange macro","shortMessageHtmlLink":"Merge pull request #263 from isblab/develop"}},{"before":"82a811041ed1319d5d9836c45a8e91a38a8d0aed","after":"317d9ff43e435d74b1ebdf5794a648d243fe9ad9","ref":"refs/heads/legacy-pmi1","pushedAt":"2024-03-11T23:27:46.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"We now need crypt.h to run CI with Python 2","shortMessageHtmlLink":"We now need crypt.h to run CI with Python 2"}},{"before":"9a72bcca4add3e130dc934974021a13d73da7ae4","after":"422beda4d05c6954d10b60aa15ee9dc7ec8e6754","ref":"refs/heads/develop","pushedAt":"2024-03-05T23:32:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Squashed 'tools/dev_tools/' changes from c4337f5b..3ad5e0d8\n\n3ad5e0d8 Drop testing with Python 2.7, add 3.12\n17206759 Switch to argparse\n9778d818 Switch to argparse\n122d6950 Switch to argparse\n69c73496 Use codecov token to avoid rate limits\n5ae13679 Stick with older codecov action for now\n43582234 Use latest codecov GitHub Action\n7e8e4043 Use current year for copyright of autogen files\n8164076f Run flake8 separately, not as part of pytest\n84af9307 flake8 fix\nfb3f9d03 Test with Python 3.11\n626e51c1 Use Python 3 by default\n\ngit-subtree-dir: tools/dev_tools\ngit-subtree-split: 3ad5e0d84c668cd06deebfe414d8e16820116335","shortMessageHtmlLink":"Squashed 'tools/dev_tools/' changes from c4337f5b..3ad5e0d8"}},{"before":"a27956e7de811e1c975a68c01190e28e500c5b8f","after":"9a72bcca4add3e130dc934974021a13d73da7ae4","ref":"refs/heads/develop","pushedAt":"2024-02-18T04:24:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"We now need crypt.h to run CI with Python 2","shortMessageHtmlLink":"We now need crypt.h to run CI with Python 2"}},{"before":"3b789d50003db182fa49e0efdf6328ebcf0786b4","after":"a27956e7de811e1c975a68c01190e28e500c5b8f","ref":"refs/heads/develop","pushedAt":"2024-01-31T00:53:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Revert to codecov v3 for now, v4 appears unavailable","shortMessageHtmlLink":"Revert to codecov v3 for now, v4 appears unavailable"}},{"before":"82dfcb4537b9bc54c951a0b06f6101d407926d44","after":"3b789d50003db182fa49e0efdf6328ebcf0786b4","ref":"refs/heads/develop","pushedAt":"2024-01-31T00:51:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Use latest actions","shortMessageHtmlLink":"Use latest actions"}},{"before":"b7980dfc910b6471ddd9771bec3a7e1522526274","after":"82dfcb4537b9bc54c951a0b06f6101d407926d44","ref":"refs/heads/develop","pushedAt":"2024-01-30T20:57:32.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Drop PMI1 text","shortMessageHtmlLink":"Drop PMI1 text"}},{"before":"e58a385a77829d6e227ab78aad40eb3f21efc251","after":"b7980dfc910b6471ddd9771bec3a7e1522526274","ref":"refs/heads/develop","pushedAt":"2023-12-20T22:17:12.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Remove deprecated get_is_canonical()","shortMessageHtmlLink":"Remove deprecated get_is_canonical()"}},{"before":"d4e053edd94cf9bb73b524210d65de872ea31f59","after":"82a811041ed1319d5d9836c45a8e91a38a8d0aed","ref":"refs/heads/legacy-pmi1","pushedAt":"2023-12-17T16:54:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Use older pip to fix Python 2 CI","shortMessageHtmlLink":"Use older pip to fix Python 2 CI"}},{"before":"4557f014dd827731fc11ef55530d26d161b092a5","after":"d4e053edd94cf9bb73b524210d65de872ea31f59","ref":"refs/heads/legacy-pmi1","pushedAt":"2023-12-17T16:49:10.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Don't fail if no contacts were found\n\nIf no crosslinks were satisfied for a pair of\nsubunits, previously the subplot failed due to\ntrying to calculate log(0). Set a dummy max\nin this case.","shortMessageHtmlLink":"Don't fail if no contacts were found"}},{"before":"fa6295c6bf52673ae8a35ab21d72dcc99f43cf36","after":"e58a385a77829d6e227ab78aad40eb3f21efc251","ref":"refs/heads/develop","pushedAt":"2023-12-17T16:48:36.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Don't fail if no contacts were found\n\nIf no crosslinks were satisfied for a pair of\nsubunits, previously the subplot failed due to\ntrying to calculate log(0). Set a dummy max\nin this case.","shortMessageHtmlLink":"Don't fail if no contacts were found"}},{"before":"9f3a41425cc550caa103aa364622638250723952","after":"fa6295c6bf52673ae8a35ab21d72dcc99f43cf36","ref":"refs/heads/develop","pushedAt":"2023-12-03T03:29:56.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Use older pip to fix Python 2 CI","shortMessageHtmlLink":"Use older pip to fix Python 2 CI"}},{"before":"0cc74fff4953507f2bca3763ac62fb3970cc407e","after":"9f3a41425cc550caa103aa364622638250723952","ref":"refs/heads/develop","pushedAt":"2023-11-18T23:53:55.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Fix markup","shortMessageHtmlLink":"Fix markup"}},{"before":"77f0301dd11bbec99cc47ca4c3a4897439df5fcd","after":"0cc74fff4953507f2bca3763ac62fb3970cc407e","ref":"refs/heads/develop","pushedAt":"2023-11-17T22:30:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Improve docs, relates #262","shortMessageHtmlLink":"Improve docs, relates #262"}},{"before":"c5f755d4c56824be0fc34be1f422499424ba6eb6","after":"77f0301dd11bbec99cc47ca4c3a4897439df5fcd","ref":"refs/heads/develop","pushedAt":"2023-11-01T22:53:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"flake8 fix","shortMessageHtmlLink":"flake8 fix"}},{"before":"75e97da738e7e11056daf345f057f8ba70482b62","after":"c5f755d4c56824be0fc34be1f422499424ba6eb6","ref":"refs/heads/develop","pushedAt":"2023-11-01T22:42:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Clarify docs for offset, relates #261","shortMessageHtmlLink":"Clarify docs for offset, relates #261"}},{"before":"a6ca47455e0751c52bda97c9a341327317625368","after":"4557f014dd827731fc11ef55530d26d161b092a5","ref":"refs/heads/legacy-pmi1","pushedAt":"2023-10-27T20:01:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Update CI to use Python 3.12","shortMessageHtmlLink":"Update CI to use Python 3.12"}},{"before":"c1cbfbc95b95920b3bf031da0637c045a3d878b9","after":"75e97da738e7e11056daf345f057f8ba70482b62","ref":"refs/heads/develop","pushedAt":"2023-10-27T20:00:30.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Update CI to use Python 3.12","shortMessageHtmlLink":"Update CI to use Python 3.12"}},{"before":"65ececb561efd812e4b5ab8fcd4ad9253386c887","after":"a6ca47455e0751c52bda97c9a341327317625368","ref":"refs/heads/legacy-pmi1","pushedAt":"2023-10-11T20:46:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Newer Boost is only needed for Python 3 builds","shortMessageHtmlLink":"Newer Boost is only needed for Python 3 builds"}},{"before":"c768064900069cc177e1ba48c540f4e25563e543","after":"c1cbfbc95b95920b3bf031da0637c045a3d878b9","ref":"refs/heads/develop","pushedAt":"2023-10-11T20:45:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"Newer Boost is only needed for Python 3 builds","shortMessageHtmlLink":"Newer Boost is only needed for Python 3 builds"}},{"before":"45caf961229cf4919a12b8244cfa2794b7d7fbfc","after":"65ececb561efd812e4b5ab8fcd4ad9253386c887","ref":"refs/heads/legacy-pmi1","pushedAt":"2023-10-11T20:27:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"We now need Boost headers to build with IMP","shortMessageHtmlLink":"We now need Boost headers to build with IMP"}},{"before":"abec8822a3b4666ad89ea0a202c65a4ac7097430","after":"c768064900069cc177e1ba48c540f4e25563e543","ref":"refs/heads/develop","pushedAt":"2023-10-11T20:26:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"benmwebb","name":"Ben Webb","path":"/benmwebb","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/2257210?s=80&v=4"},"commit":{"message":"We now need Boost headers to build with IMP","shortMessageHtmlLink":"We now need Boost headers to build with IMP"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEXZwA2gA","startCursor":null,"endCursor":null}},"title":"Activity ยท salilab/pmi"}