From 036919f6532bb262663e2a88ddbf64ee71fe879c Mon Sep 17 00:00:00 2001 From: Gao Wang Date: Wed, 12 Feb 2020 10:59:05 -0500 Subject: [PATCH] Update documentation --- .../pedagogical_example.html | 58 ++++++++++++++++++- .../selective_inference_toy.html | 1 + manuscript_results/pedagogical_example.ipynb | 16 ++--- 3 files changed, 65 insertions(+), 10 deletions(-) diff --git a/docs/manuscript_results/pedagogical_example.html b/docs/manuscript_results/pedagogical_example.html index 4cd5057..4088453 100644 --- a/docs/manuscript_results/pedagogical_example.html +++ b/docs/manuscript_results/pedagogical_example.html @@ -547,7 +547,61 @@

Comparing SuSiE with per-v
-

The identified CS are:

+

For the middle panel, the CS looks like:

+ +
+
+
+
+
+
In [11]:
+
+
+
print(fitted.one.iter$sets)
+
+ +
+
+
+ +
+
+ + +
+ +
+ + +
+
$cs
+$cs$L1
+ [1] 765 767 770 774 776 778 780 782 783 788 790 791 792 814 817 824 827 834 837
+[20] 838 847 849 868 869
+
+
+$purity
+   min.abs.corr mean.abs.corr median.abs.corr
+L1     0.779715     0.9254931       0.9270952
+
+$cs_index
+[1] 1
+
+$coverage
+[1] 0.95
+
+
+
+
+ +
+
+ +
+
+
+
+

The ultimately identified CS are:

@@ -2341,7 +2395,7 @@

95% CS

Si

© 2017-2018 authored by Gao Wang at Stephens Lab, The University of Chicago -

Exported from manuscript_results/pedagogical_example.ipynb committed by Gao Wang on Wed Feb 12 09:56:40 2020 revision 20, ab9fad1

+

Exported from manuscript_results/pedagogical_example.ipynb committed by Gao Wang on Wed Feb 12 10:04:47 2020 revision 21, 642561b

diff --git a/docs/manuscript_results/selective_inference_toy.html b/docs/manuscript_results/selective_inference_toy.html index a07d6fb..5d47dea 100644 --- a/docs/manuscript_results/selective_inference_toy.html +++ b/docs/manuscript_results/selective_inference_toy.html @@ -577,6 +577,7 @@

Summary

Exported from manuscript_results/selective_inference_toy.Rmd committed by Gao Wang on Thu Jul 11 11:20:51 2019 revision 5, 52efa03

Exported from manuscript_results/selective_inference_toy.Rmd committed by Gao Wang on Thu Jul 11 11:20:51 2019 revision 5, 52efa03

+

Exported from manuscript_results/selective_inference_toy.Rmd committed by Gao Wang on Thu Jul 11 11:20:51 2019 revision 5, 52efa03

diff --git a/manuscript_results/pedagogical_example.ipynb b/manuscript_results/pedagogical_example.ipynb index 76df3dd..15bd0ed 100644 --- a/manuscript_results/pedagogical_example.ipynb +++ b/manuscript_results/pedagogical_example.ipynb @@ -38,7 +38,13 @@ " Date\n", " Message\n", " \n", - " baa6a01\n", + " 642561b\n", + "Gao Wang\n", + "2020-02-12\n", + "Assess property of an intermediate CSab9fad1\n", + "Gao Wang\n", + "2020-02-12\n", + "Change text on plotsbaa6a01\n", "Gao Wang\n", "2020-02-06\n", "Add plot for the 1st iterationc2bc3fb\n", @@ -62,13 +68,7 @@ "Update notebook narratives593cb30\n", "Gao Wang\n", "2018-12-14\n", - "Improve figuresf56a122\n", - "Gao Wang\n", - "2018-12-04\n", - "Use new option to plot CS size and purity35d8987\n", - "Gao Wang\n", - "2018-11-19\n", - "Simplified SuSiE main interface" + "Improve figures" ] }, "metadata": {},