Skip to content
@AstroPathJHU

AstroPath

AstroPath Platform Code
README.md

This project unites [Astro]nomy and [Path]ology concepts, emphasizing spatial biology to advance cancer immunotherapy research. We develop tools aimed at uncovering novel biomarkers and new biological mechanisms.

Pinned Loading

  1. AstroPathPipeline Public

    The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.

    Python 18 3

  2. mIFTO Public

    Multiplex Immunoflouresence Titration Optimization (mIFTO) R Package

    R 6 3

  3. MaSS Public

    MaSS (Merge a Single Sample); code to merge multipass inForm data

    MATLAB 2

  4. SegTool Public

    Create a segmentation tool for comparing inform and ML approaches while creating an unbiased ground truth

    MATLAB 1

Repositories

Showing 10 of 13 repositories
  • AstroPathPipeline Public

    The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell resolution.

    Python 18 Apache-2.0 3 0 0 Updated Apr 21, 2025
  • ConvertIm3 Public

    The executable was written by Richard Wilton to extract the bitmap and metadata information from the akoya im3 image files.ConvertIm3Path is a powershell code, added by Benjamin Green and is a soft wrapper for the executable to run on the sample level and is dependent on the images being in the AstropathPipeline directory format. ConvertIm3Cohor…

    PowerShell 0 MIT 1 0 0 Updated Apr 10, 2025
  • MaSS Public

    MaSS (Merge a Single Sample); code to merge multipass inForm data

    MATLAB 2 0 0 0 Updated Apr 10, 2025
  • WSIMIR Public

    Perform multi-modality whole slide to whole slide pathology image registration

    MATLAB 5 MIT 1 0 0 Updated Apr 4, 2025
  • mIFTO Public

    Multiplex Immunoflouresence Titration Optimization (mIFTO) R Package

    R 6 MIT 3 3 0 Updated Apr 2, 2025
  • ROCPicker Public
    Python 0 Apache-2.0 0 0 0 Updated Dec 19, 2024
  • Thresholding Public
    Python 0 MIT 0 0 0 Updated Oct 18, 2024
  • .github Public
    0 0 0 0 Updated Aug 26, 2024
  • SciScript-Python Public Forked from sciserver/SciScript-Python

    Python libraries for SciScript, Jupyter Notebooks

    Python 0 22 0 0 Updated May 23, 2024
  • SegTool Public

    Create a segmentation tool for comparing inform and ML approaches while creating an unbiased ground truth

    MATLAB 0 MIT 1 0 0 Updated Mar 18, 2024
View all repositories

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Top languages

Loading…

Most used topics

Loading…