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Description
libquadmath.so.0: cannot open shared object file: No such file or directory
Stacktrace:
[1] dlopen(s::String, flags::UInt32; throw_error::Bool)
@ Base.Libc.Libdl ./libdl.jl:120
[2] dlopen(s::String, flags::UInt32)
@ Base.Libc.Libdl ./libdl.jl:119
[3] macro expansion
@ ~/.julia/packages/JLLWrappers/GfYNv/src/products/library_generators.jl:63 [inlined]
[4] __init__()
@ OpenSpecFun_jll ~/.julia/packages/OpenSpecFun_jll/4QIOW/src/wrappers/x86_64-linux-gnu-libgfortran5.jl:9
[5] run_module_init(mod::Module, i::Int64)
@ Base ./loading.jl:1378
[6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1366
[7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any}, ignore_native::Nothing; register::Bool)
@ Base ./loading.jl:1254
[8] _include_from_serialized (repeats 2 times)
@ ./loading.jl:1210 [inlined]
[9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})
@ Base ./loading.jl:2057
[10] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2527
[11] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2388
[12] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[13] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[14] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2375
[15] macro expansion
@ ./loading.jl:2314 [inlined]
[16] macro expansion
@ ./lock.jl:273 [inlined]
[17] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[18] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[19] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[20] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[21] include
@ ./Base.jl:557 [inlined]
[22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:2881
[23] top-level scope
@ stdin:6
during initialization of module OpenSpecFun_jll
in expression starting at ~/.julia/packages/SpecialFunctions/Zijv9/src/SpecialFunctions.jl:1
in expression starting at stdin:6
Current workaround is to use patchelf to point to Julia installation's provided libraries instead of the hardcoded locations
sudo patchelf --replace-needed libgfortran.so.5 $(nix path-info nixpkgs#julia)/lib/julia/libgfortran.so.5 libopenspecfun.so.2.1
sudo patchelf --replace-needed libquadmath.so.0 $(nix path-info nixpkgs#julia)/lib/julia/libquadmath.so.0 libopenspecfun.so.2.1
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