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  • University of Birmingham

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amyduguid2/README.md

👋 Hi, I'm Amy

I'm a Bioinformatics MSc student with a background in natural sciences, passionate about translating biological data into insights using computational tools. I'm especially interested in:

  • 🔬 Genomics & Transcriptomics
  • 🧠 Applications of AI/ML in Biomedical Research

🛠️ Tools & Languages

  • 🐍 Python (Pandas, NumPy, scikit-learn, Tensorflow, Seaborn)
  • 🐧 Linux, Bash, HPC cluster usage
  • 📊 R (DESeq2, edgeR, limma, ggplot2)
  • 🧬 NGS data: FASTQ → BAM → Counts → DEGs → Pathway Analysis
  • 🧪 Multi-omics Analysis: Data processing and statistical analysis

📘 Current Projects

  • 🧠 Thesis: Deep learning models for stratifying acute myeloid leukemia patients
  • 🌱 Exploring RNA Sequencing analysis in non-model organisms (faba bean transcriptome)
  • 🔍 Data integration methods and deep learning models

📫 How to Reach Me

Thanks for visiting! 😊

Pinned Loading

  1. RNA_Seq_Pipeline_Vicia_Faba RNA_Seq_Pipeline_Vicia_Faba Public

    Shell

  2. Multiomics_River_Sample_Toxicity_Analysis Multiomics_River_Sample_Toxicity_Analysis Public

    R

  3. neuroblastoma_risk_prediction_FNN neuroblastoma_risk_prediction_FNN Public

    Jupyter Notebook

  4. Maths_and_Stats Maths_and_Stats Public

    HTML

  5. domgor11/team-overloaded domgor11/team-overloaded Public

    Jupyter Notebook

  6. DEG_Analysis_Cancer_Paracancer DEG_Analysis_Cancer_Paracancer Public

    HTML