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@Boyle-Lab

The Boyle Lab

Popular repositories Loading

  1. Blacklist Blacklist Public

    Application for making ENCODE Blacklists

    C++ 295 40

  2. SEMpl SEMpl Public

    C++ implementation of the SEM algorithm

    C 16 3

  3. HMMSTR HMMSTR Public

    Python 12 3

  4. TE-Driven-CTCF-Loop-Evol TE-Driven-CTCF-Loop-Evol Public

    R 9 2

  5. TRACE TRACE Public

    TRACE: HMM for DNase footprinting and motif matching

    C 7 7

  6. F-Seq2 F-Seq2 Public

    Improving the feature density based peak caller with dynamic statistics

    Python 7

Repositories

Showing 10 of 40 repositories
  • Boyle-Lab.github.io Public
    HTML 0 0 0 0 Updated Mar 11, 2025
  • HaplotagLR Public

    A tool for phasing long-read sequencing results.

    Python 3 MIT 0 5 0 Updated Mar 10, 2025
  • GPatch-Manuscript Public

    Data retrieval and Analysis steps for the GPatch manuscript.

    Python 0 MIT 0 0 0 Updated Mar 7, 2025
  • SEMpl Public

    C++ implementation of the SEM algorithm

    C 16 3 0 0 Updated Dec 18, 2024
  • HMMSTR Public
    Python 12 MIT 3 1 0 Updated Dec 16, 2024
  • OnRamp-Web-App Public
    JavaScript 0 0 0 0 Updated Dec 13, 2024
  • NanoPal-Snakemake Public

    A Snakemake version of https://github.com/WeichenZhou/NanoPal-and-Cas9-targeted-enrichment-pipelines

    Shell 1 0 0 0 Updated Dec 4, 2024
  • nanopore_guide_design Public

    Nextflow pipeline for generating, filtering, and prioritizing candidate guide RNA sequences

    Python 1 0 0 0 Updated Nov 20, 2024
  • F-Seq2 Public

    Improving the feature density based peak caller with dynamic statistics

    Python 7 GPL-3.0 0 2 0 Updated Oct 23, 2024
  • HMMSTR_depreciated Public Forked from Boyle-Lab/HMMSTR
    Python 4 MIT 3 0 1 Updated Sep 12, 2024
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