{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":259973984,"defaultBranch":"master","name":"emg-viral-pipeline","ownerLogin":"EBI-Metagenomics","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-04-29T16:04:00.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/32897658?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1715199003.0","currentOid":""},"activityList":{"items":[{"before":"3708071d71b19e72c71c06dd2c8aa3c5a0eb232c","after":"aad5474411ea31449b3e8a26eeed8920dd07fa17","ref":"refs/heads/master","pushedAt":"2024-05-08T20:09:15.000Z","pushType":"pr_merge","commitsCount":14,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Merge pull request #124 from EBI-Metagenomics/dev\n\nMerge small set of fixes for new release #123","shortMessageHtmlLink":"Merge pull request #124 from EBI-Metagenomics/dev"}},{"before":"c3eac2f3291036325a244bcb2c89d967ea21add0","after":"df647fb9dacd07a7742119a4916287928c854ea9","ref":"refs/heads/dev","pushedAt":"2024-05-08T16:26:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Temporary remove the checksums on the pytest-wf.\n\nI will update them after this release.","shortMessageHtmlLink":"Temporary remove the checksums on the pytest-wf."}},{"before":"671f71336d9ef126fe40b1141251f870ac90bbd6","after":"c3eac2f3291036325a244bcb2c89d967ea21add0","ref":"refs/heads/dev","pushedAt":"2024-05-08T14:58:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Argh... the sing-cache folder for Jenkins","shortMessageHtmlLink":"Argh... the sing-cache folder for Jenkins"}},{"before":"80f8b56bb4b03dbefadaedaab8e083ecc29ea87a","after":"671f71336d9ef126fe40b1141251f870ac90bbd6","ref":"refs/heads/dev","pushedAt":"2024-05-08T14:54:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Another tweak to the wd for Jenkings","shortMessageHtmlLink":"Another tweak to the wd for Jenkings"}},{"before":"603c2080381958555105d516098e97c464d132e0","after":"80f8b56bb4b03dbefadaedaab8e083ecc29ea87a","ref":"refs/heads/dev","pushedAt":"2024-05-08T14:32:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Adjust the path of the EBI Jenkins CI - wd directory","shortMessageHtmlLink":"Adjust the path of the EBI Jenkins CI - wd directory"}},{"before":"d166936ab33a6f6dcb7c1991abf85fb12dd4bd91","after":"603c2080381958555105d516098e97c464d132e0","ref":"refs/heads/dev","pushedAt":"2024-05-08T14:27:20.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Merge branch 'dev' of github.com:EBI-Metagenomics/emg-viral-pipeline into dev","shortMessageHtmlLink":"Merge branch 'dev' of github.com:EBI-Metagenomics/emg-viral-pipeline …"}},{"before":"6483cbfea77b0117349aa55ef6dc5a318c2fe7f9","after":"d166936ab33a6f6dcb7c1991abf85fb12dd4bd91","ref":"refs/heads/dev","pushedAt":"2024-05-07T08:26:30.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Merge pull request #123 from EBI-Metagenomics/feature/optional-parse-results\n\nPrase.nf results are optional.","shortMessageHtmlLink":"Merge pull request #123 from EBI-Metagenomics/feature/optional-parse-…"}},{"before":null,"after":"b88517b3596dc14a45c72c5c8e98ee19814a188b","ref":"refs/heads/feature/optional-parse-results","pushedAt":"2024-04-30T16:24:21.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Prase.nf results are optional.\n\nThis is to prevent the pipeline from \"failing\" when there are no\nviral annotations.","shortMessageHtmlLink":"Prase.nf results are optional."}},{"before":"ebc68951fca9d25c21bd58ff128ee170b32c08e1","after":"96d2d385e401d6a7ffa8940a453f30eedce1a2c8","ref":"refs/heads/hotfix/allow_slurm_profile","pushedAt":"2024-04-30T10:45:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Vkale1","name":"Varsha Kale","path":"/Vkale1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34109092?s=80&v=4"},"commit":{"message":"increase slurm timings","shortMessageHtmlLink":"increase slurm timings"}},{"before":"03531ed8d9a63e2cae720a6e8e309879b48a0348","after":"ebc68951fca9d25c21bd58ff128ee170b32c08e1","ref":"refs/heads/hotfix/allow_slurm_profile","pushedAt":"2024-04-29T14:58:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Vkale1","name":"Varsha Kale","path":"/Vkale1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34109092?s=80&v=4"},"commit":{"message":"add default time for slurm testing","shortMessageHtmlLink":"add default time for slurm testing"}},{"before":"4d853f7c41ae76f6b1f0756de6f7a16a14475992","after":"03531ed8d9a63e2cae720a6e8e309879b48a0348","ref":"refs/heads/hotfix/allow_slurm_profile","pushedAt":"2024-04-29T14:39:25.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Vkale1","name":"Varsha Kale","path":"/Vkale1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34109092?s=80&v=4"},"commit":{"message":"add default time for slurm testing","shortMessageHtmlLink":"add default time for slurm testing"}},{"before":"2761b2cb03c2e254114b716f4c76091f1df86a39","after":"4d853f7c41ae76f6b1f0756de6f7a16a14475992","ref":"refs/heads/hotfix/allow_slurm_profile","pushedAt":"2024-04-29T10:05:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Vkale1","name":"Varsha Kale","path":"/Vkale1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34109092?s=80&v=4"},"commit":{"message":"add default time for slurm testing","shortMessageHtmlLink":"add default time for slurm testing"}},{"before":null,"after":"2761b2cb03c2e254114b716f4c76091f1df86a39","ref":"refs/heads/hotfix/allow_slurm_profile","pushedAt":"2024-04-29T09:21:48.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Vkale1","name":"Varsha Kale","path":"/Vkale1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34109092?s=80&v=4"},"commit":{"message":"remove lsf requirement for ebi profile","shortMessageHtmlLink":"remove lsf requirement for ebi profile"}},{"before":"2761b2cb03c2e254114b716f4c76091f1df86a39","after":null,"ref":"refs/heads/hotfix/allow_slurm_profile","pushedAt":"2024-04-25T15:39:02.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"Vkale1","name":"Varsha Kale","path":"/Vkale1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34109092?s=80&v=4"}},{"before":"b5c1ed239731dabf09cf9a1ce4b42e7407f5a21b","after":"6483cbfea77b0117349aa55ef6dc5a318c2fe7f9","ref":"refs/heads/dev","pushedAt":"2024-04-25T13:08:21.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"Vkale1","name":"Varsha Kale","path":"/Vkale1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34109092?s=80&v=4"},"commit":{"message":"Merge pull request #122 from EBI-Metagenomics/hotfix/allow_slurm_profile\n\nremove lsf requirement for ebi profile","shortMessageHtmlLink":"Merge pull request #122 from EBI-Metagenomics/hotfix/allow_slurm_profile"}},{"before":null,"after":"2761b2cb03c2e254114b716f4c76091f1df86a39","ref":"refs/heads/hotfix/allow_slurm_profile","pushedAt":"2024-04-25T09:57:59.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Vkale1","name":"Varsha Kale","path":"/Vkale1","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/34109092?s=80&v=4"},"commit":{"message":"remove lsf requirement for ebi profile","shortMessageHtmlLink":"remove lsf requirement for ebi profile"}},{"before":"26090d6d229cb519e0bb345f869dcde693ffe9ab","after":"b5c1ed239731dabf09cf9a1ce4b42e7407f5a21b","ref":"refs/heads/dev","pushedAt":"2023-10-10T14:05:06.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Merge branch 'dev' of github.com:EBI-Metagenomics/emg-viral-pipeline into dev","shortMessageHtmlLink":"Merge branch 'dev' of github.com:EBI-Metagenomics/emg-viral-pipeline …"}},{"before":"2743de84c67629fdba7f468bfa3ac9890332e9d5","after":"26090d6d229cb519e0bb345f869dcde693ffe9ab","ref":"refs/heads/dev","pushedAt":"2023-10-10T13:31:51.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Update EBI Jenkins workdir","shortMessageHtmlLink":"Update EBI Jenkins workdir"}},{"before":"1207242a17865dc8991dbb9520b32514398d51df","after":"3708071d71b19e72c71c06dd2c8aa3c5a0eb232c","ref":"refs/heads/master","pushedAt":"2023-09-21T10:34:10.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Merge pull request #114 from EBI-Metagenomics/dev\n\nFix Chromomap container","shortMessageHtmlLink":"Merge pull request #114 from EBI-Metagenomics/dev"}},{"before":null,"after":"80593cce02a52f836d70798c169db6f545916067","ref":"refs/heads/out_lineage","pushedAt":"2023-09-19T13:24:22.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"guille0387","name":"Guillermo Rangel-Pineros","path":"/guille0387","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25911865?s=80&v=4"},"commit":{"message":"include more output ranks and reverse order","shortMessageHtmlLink":"include more output ranks and reverse order"}},{"before":"6078c044725503b408d1c8033c083f8140def269","after":"2743de84c67629fdba7f468bfa3ac9890332e9d5","ref":"refs/heads/dev","pushedAt":"2023-09-15T13:42:38.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"hoelzer","name":"Martin Hölzer","path":"/hoelzer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14393703?s=80&v=4"},"commit":{"message":"Merge pull request #112 from EBI-Metagenomics/bugfix/chromomap-container\n\nFix the Chromomap container.","shortMessageHtmlLink":"Merge pull request #112 from EBI-Metagenomics/bugfix/chromomap-container"}},{"before":null,"after":"cf179e7e812c1ecc8279a1ab6e8ea0e2d89acbff","ref":"refs/heads/bugfix/chromomap-container","pushedAt":"2023-09-06T13:48:10.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Fix the Chromomap container.","shortMessageHtmlLink":"Fix the Chromomap container."}},{"before":"aaf02d636a0d9eaf6a506b28c5a95bc988ee2bbb","after":"1207242a17865dc8991dbb9520b32514398d51df","ref":"refs/heads/master","pushedAt":"2023-07-17T11:29:36.000Z","pushType":"pr_merge","commitsCount":17,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Merge pull request #103 from EBI-Metagenomics/dev\n\nAdjustment of the voting scheme and updated viral taxonomy and bugfixes for new release","shortMessageHtmlLink":"Merge pull request #103 from EBI-Metagenomics/dev"}},{"before":"19905717f65b002f8de597f12c31c7b2dc2967d1","after":"6078c044725503b408d1c8033c083f8140def269","ref":"refs/heads/dev","pushedAt":"2023-07-17T10:43:42.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Update bin/ratio_evalue_table.py v4 metadata file","shortMessageHtmlLink":"Update bin/ratio_evalue_table.py v4 metadata file"}},{"before":"d0283f21ea1bd463555bb65833b0d4a116788b0f","after":"19905717f65b002f8de597f12c31c7b2dc2967d1","ref":"refs/heads/dev","pushedAt":"2023-07-17T08:00:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"guille0387","name":"Guillermo Rangel-Pineros","path":"/guille0387","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25911865?s=80&v=4"},"commit":{"message":"cds_std null values replaced with 0.0","shortMessageHtmlLink":"cds_std null values replaced with 0.0"}},{"before":"98388a0042b5faae1fbd0d930937a0f8d9af0054","after":"d0283f21ea1bd463555bb65833b0d4a116788b0f","ref":"refs/heads/dev","pushedAt":"2023-07-14T15:45:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hoelzer","name":"Martin Hölzer","path":"/hoelzer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14393703?s=80&v=4"},"commit":{"message":"Update sankey plot","shortMessageHtmlLink":"Update sankey plot"}},{"before":"9935e6e88c91f5275fe02651a1bfd9cf69718699","after":"98388a0042b5faae1fbd0d930937a0f8d9af0054","ref":"refs/heads/dev","pushedAt":"2023-07-14T15:41:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"hoelzer","name":"Martin Hölzer","path":"/hoelzer","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14393703?s=80&v=4"},"commit":{"message":"Update README, add new overivew plot. Fixed #105 and commented on CWL discontinue.","shortMessageHtmlLink":"Update README, add new overivew plot. Fixed #105 and commented on CWL…"}},{"before":"88b26f923a1d6cec187e0f60e4c8ac63d441df9f","after":null,"ref":"refs/heads/bugfix/remove-old-viphogs-models","pushedAt":"2023-07-11T19:30:46.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"}},{"before":"a906e363e7ab27e56cdd5bf62b6d9db67be8c930","after":"9935e6e88c91f5275fe02651a1bfd9cf69718699","ref":"refs/heads/dev","pushedAt":"2023-07-11T19:30:37.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Merge pull request #106 from EBI-Metagenomics/bugfix/remove-old-viphogs-models\n\nMetadata file v4, also included a warning about the deleted taxa.","shortMessageHtmlLink":"Merge pull request #106 from EBI-Metagenomics/bugfix/remove-old-vipho…"}},{"before":"2ca3f64a52695c62a98eec6aeef34851224bea69","after":"88b26f923a1d6cec187e0f60e4c8ac63d441df9f","ref":"refs/heads/bugfix/remove-old-viphogs-models","pushedAt":"2023-07-05T12:22:20.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"mberacochea","name":"Martín Beracochea","path":"/mberacochea","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/1123897?s=80&v=4"},"commit":{"message":"Updated metadata file and warning message.\n\nAlso removed duplicated file","shortMessageHtmlLink":"Updated metadata file and warning message."}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAERQDTIgA","startCursor":null,"endCursor":null}},"title":"Activity · EBI-Metagenomics/emg-viral-pipeline"}